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revision 1.9 by dimitri, Sun Dec 14 02:06:15 2003 UTC revision 1.15 by dimitri, Sat Jan 10 18:09:09 2004 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: December 11, 2003.  Date last tested: January 9, 2004.
3    This is the code used for first multi-year 510x510x6
4    cube-sphere integration.
5    
6    
7  ##########################################################################  ##########################################################################
8  ##########################################################################  ##########################################################################
9  # 32*32*6*15, 1-cpu cube sphere  # getting the code from anonymous CVS server
10    
11  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack
12  cvs login ( CVS password: cvsanon )  cvs login ( CVS password: cvsanon )
13  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/README_ice
14  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/code-mods
15  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/matlab-grid-converter
16  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/input
17  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  cvs co -r hr_cube1 MITgcm_contrib/high_res_cube/results
18  cvs co -r checkpoint52d_pre MITgcm_code  cvs co -r hr_cube1 MITgcm_code
19  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  cvs co -r hr_cube1 MITgcm/verification/global_ocean.cs32x15
20    
21    
22    ##########################################################################
23    ##########################################################################
24    # 32*32*6*15, 1-cpu cube sphere
25    
26  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
27  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 24  cd MITgcm/verification/global_ocean.cs32 Line 31  cd MITgcm/verification/global_ocean.cs32
31  cd ..  cd ..
32  mkdir build  mkdir build
33  cd build  cd build
34  ../code/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
35  make depend  make depend
36  make  make
37    
38  cd ..  cd ..
39  mkdir run  mkdir run
40  cd run  cd run
 \cp ../inp_thsice/* .  
41  \cp ../input/* .  \cp ../input/* .
42  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
43  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
# Line 52  end Line 58  end
58  ##########################################################################  ##########################################################################
59  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 32*32*6*15, 2-cpu cube sphere on the altices with efc
60    
 setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
   
61  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
62  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
63  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .
# Line 72  cd MITgcm/verification/global_ocean.cs32 Line 68  cd MITgcm/verification/global_ocean.cs32
68  cd ..  cd ..
69  mkdir build  mkdir build
70  cd build  cd build
71  ../code/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
72    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
73  make depend  make depend
74  make  make
75    
76  cd ..  cd ..
77  mkdir run  mkdir run
78  cd run  cd run
79  \cp ../inp_thsice/* .  \rm *
80  \cp ../input/* .  \cp ../input/* .
81  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .
82  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
# Line 89  mpirun -np 2 ../build/mitgcmuv Line 86  mpirun -np 2 ../build/mitgcmuv
86  ##########################################################################  ##########################################################################
87  ##########################################################################  ##########################################################################
88  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-cpu cube sphere on the altices with efc
89    # requires input files in sudirectories run_template and ncep_rgau
90  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  # presently residing under orion:/tmp1/dmenem/cube
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
91    
92  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
93  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
94  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
95  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_54 SIZE.h
96  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
97    \cp packages.conf_hr packages.conf
98    \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
99  \rm mdsio_readfield.F  \rm mdsio_readfield.F
100    
101  cd ..  cd ..
102  mkdir build  mkdir build
103  cd build  cd build
104  ../code/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
105    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi
106  make depend  make depend
107  make  make
108    
109  cd ..  cd ..
110  mkdir run  mkdir run
111  cd run  cd run
112  \cp ../inp_thsice/* .  \rm *
113  \cp ../input/* .  \cp ../input/* .
114  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
 \cp data_hr data  
 \ln -sf ../../../../run_template/tile00* .  
 \ln -sf ../../../../run_template/LEV* .  
 \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  
115  qsub job_orion  qsub job_orion
116    
117    
118  ##########################################################################  ##########################################################################
119  ##########################################################################  ##########################################################################
120  # 510*510*6*50, 216-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with efc
   
 setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
121    
122  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
123  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
124  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
125  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
126  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h
127    \cp packages.conf_hr packages.conf
128    \cp mom_vi_hdissip.F_hr mom_vi_hdissip.F
129  \rm mdsio_readfield.F  \rm mdsio_readfield.F
130    
131  cd ..  cd ..
132  mkdir build  mkdir build
133  cd build  cd build
134  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
135    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
136  make depend  make depend
137  make  make
138    
139  cd ..  cd ..
140  mkdir run  mkdir run
141  cd run  cd run
142  \cp ../inp_thsice/* .  \rm *
143  \cp ../input/* .  \cp ../input/* .
144  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
145  \cp data_hr data  qsub job_altix
 \cp data.pkg_hr data.pkg  
 \ln -sf ../../../../run_template/tile00* .  
 \ln -sf ../../../../run_template/LEV* .  
 \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  
 qsub job_orion  
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