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revision 1.9 by dimitri, Sun Dec 14 02:06:15 2003 UTC revision 1.70 by dimitri, Thu Oct 12 05:45:52 2006 UTC
# Line 1  Line 1 
1  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
2  Date last tested: December 11, 2003.  
3    September 28, 2006: 216-CPU code for cube38
4    
5    September 4, 2006
6    Modified 32*32*6*15 experiments to use grid_cs32.* files from
7     verification/tutorial_held_suarez_cs/input instead of
8     tile* files from verification/global_ocean.cs32x15/input
9    
10    August 8, 2006
11    216-CPU code and input used for integrating cube37
12    using "June 10, 2006" MITgcm code.
13    
14    for online T/S profile diagnostics all that is needed is
15      profiles_init_fixed
16      profiles_inloop
17    see pkg/ecco/ecco_cost_init_fixed.F
18        pkg/ecco/cost_averagesfields.F
19    
20    
21  ##########################################################################  ##########################################################################
22  ##########################################################################  ##########################################################################
23  # 32*32*6*15, 1-cpu cube sphere  # getting the code from anonymous CVS server
24    #
25    
26      bash or sh shell:
27        $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
28        $ cvs login
29          ( enter the CVS password: "cvsanon" )
30    
31      tcsh or csh shell:
32        $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
33        $ cvs login
34          ( enter the CVS password: "cvsanon" )
35    
36    cvs co MITgcm_contrib/high_res_cube/README_ice
37    cvs co MITgcm_contrib/high_res_cube/code-mods
38    cvs co MITgcm_contrib/high_res_cube/input
39    cvs co MITgcm_contrib/high_res_cube/results
40    cvs co MITgcm_code
41    cvs co MITgcm/verification/global_ocean.cs32x15
42    cvs co MITgcm/verification/tutorial_held_suarez_cs/input
43    
44    
45  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  ##########################################################################
46  cvs login ( CVS password: cvsanon )  ##########################################################################
47  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  # 32*32*6*15, 1-cpu cube sphere
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
48    
49  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
50  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
51  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
52  \rm mdsio_readfield.F  cd ../build
53    \rm *
54  cd ..  ../../../tools/genmake2 -mods=../code
 mkdir build  
 cd build  
 ../code/genmake2 -mods=../code  
55  make depend  make depend
56  make  make
   
57  cd ..  cd ..
58  mkdir run  mkdir run
59  cd run  cd run
60  \cp ../inp_thsice/* .  \rm *
61    \cp ../../tutorial_held_suarez_cs/input/grid* .
62  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
63  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
64  ../build/mitgcmuv >& output.txt  ../build/mitgcmuv >& output.txt
65    
# Line 42  comparison output is in: Line 68  comparison output is in:
68    
69  to use matlab to look at the output  to use matlab to look at the output
70  matlab  matlab
71  for fld={'Eta','VICE','UICE','HEFF','AREA','Qsw','Qnet','FV','FU','EmPmR'}  
72    for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...
73             'QNETtave','FVtave','FUtave','EmPmRtave'}
74      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);
75      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
76  end  end
77    
78    heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);
79    mask=0*heff; mask(find(heff>.001))=1;
80    uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
81    vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);
82    clf
83    subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
84    subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
85    subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
86    subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
87    
88    
89  ##########################################################################  ##########################################################################
90  ##########################################################################  ##########################################################################
91  # 32*32*6*15, 2-cpu cube sphere on the altices with efc  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
92    # requires input files in sudirectories run_template and ncep_rgau
93  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  # these can be obained from lou:/u/menemenl/cube
 cvs login ( CVS password: cvsanon )  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
94    
95  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
96  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
97  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s12t_16x32/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
98  \cp SIZE.h_mpi SIZE.h  \cp SIZE.h_216 SIZE.h
99  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
100  \rm mdsio_readfield.F  
101    cd ../build
102    \rm *
103    ../../../tools/genmake2 -mods=../code -of
104    ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
105    make depend
106    make -j
107    
108  cd ..  cd ..
109  mkdir build  mkdir run
110  cd build  cd run
111  ../code/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
112    \cp ../input/* .
113    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
114    ln -sf ../../../../run_template/* .
115    \rm pickup* data.pkg data.seaice data.exf_clim data.exf data bathy_Hmin50.bin
116    \rm *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
117    ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216
118    ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216
119    \cp ../build/mitgcmuv .
120    qsub job_altix
121    
122    
123    ##########################################################################
124    ##########################################################################
125    # 32*32*6*15, 17-tile, 1-cpu cube sphere experiment
126    
127    cd MITgcm/verification/global_ocean.cs32x15/code
128    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
129    \cp ../code_alt/code.176t_8x4/* .
130    cd ../build
131    \rm *
132    ../../../tools/genmake2 -mods=../code
133  make depend  make depend
134  make  make
135    cd ..
136    mkdir run
137    cd run
138    \rm *
139    \cp ../../tutorial_held_suarez_cs/input/grid* .
140    \cp ../input/* .
141    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
142    ../build/mitgcmuv >& output.txt
143    
144    
145    ##########################################################################
146    ##########################################################################
147    # 32*32*6*15, 2-cpu cube sphere on the altices with ifort
148    
149    cd MITgcm/verification/global_ocean.cs32x15/code
150    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
151    \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
152    \cp SIZE.h_mpi SIZE.h
153    
154    cd ../build
155    \rm *
156    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
157    make depend
158    make -j
159    
160  cd ..  cd ..
161  mkdir run  mkdir run
162  cd run  cd run
163  \cp ../inp_thsice/* .  \rm *
164    \cp ../../tutorial_held_suarez_cs/input/grid* .
165  \cp ../input/* .  \cp ../input/* .
 \cp ../../../../MITgcm_contrib/high_res_cube/matlab-grid-converter/tile00* .  
166  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
167  mpirun -np 2 ../build/mitgcmuv  mpirun -np 2 ../build/mitgcmuv
168    
169    
170  ##########################################################################  ##########################################################################
171  ##########################################################################  ##########################################################################
172  # 510*510*6*50, 54-cpu cube sphere on the altices with efc  # 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
173    # starting with pickup file from end of 1992
174    # requires input files in sudirectories run_template and ncep_rgau
175    
176    cd MITgcm/verification/global_ocean.cs32x15/code
177    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
178    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
179    \cp packages.conf_hr packages.conf
180    
181    cd ../build
182    \rm *
183    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
184    make depend
185    make -j
186    
187    cd ..
188    mkdir run
189    cd run
190    \rm *
191    \cp ../input/* .
192    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
193    qsub job_altix92_54t
194    
195  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  
196  cvs login ( CVS password: cvsanon )  ##########################################################################
197  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  ##########################################################################
198  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  # 510*510*6*50, 1500-tile, 150-cpu, excludes land
199  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  # uses s1500t_17x51 configuration
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  
 cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  
 cvs co -r checkpoint52d_pre MITgcm_code  
 cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  
200    
201  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
202  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
203  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
204  \cp SIZE.h_54 SIZE.h  \cp SIZE.h_150 SIZE.h
205  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
206  \rm mdsio_readfield.F  
207    cd ../build
208    \rm *
209    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
210    make depend
211    make -j
212    
213  cd ..  cd ..
214  mkdir build  mkdir run
215  cd build  cd run
216  ../code/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
217    \cp ../input/* .
218    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
219    ln -sf ../../../../run_template/* .
220    \rm pickup*
221    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
222    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
223    \cp ../build/mitgcmuv mitgcmuv150
224    qsub job_altix150
225    
226    
227    ##########################################################################
228    ##########################################################################
229    # 510*510*6*50, 1500-tile, 375-cpu, excludes land
230    # uses s1500t_17x51 configuration
231    # example for running on c17-c20 using arrayd
232    
233    cd MITgcm/verification/global_ocean.cs32x15/code
234    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
235    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
236    \cp SIZE.h_375 SIZE.h
237    \cp packages.conf_hr packages.conf
238    
239    cd ../build
240    \rm *
241    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
242  make depend  make depend
243  make  make -j
244    
245  cd ..  cd ..
246  mkdir run  mkdir run
247  cd run  cd run
248  \cp ../inp_thsice/* .  \rm *
249  \cp ../input/* .  \cp ../input/* .
250  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
251  \cp data_hr data  ln -sf ../../../../run_template/* .
252  \ln -sf ../../../../run_template/tile00* .  \rm pickup*
253  \ln -sf ../../../../run_template/LEV* .  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
254  \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
255  qsub job_orion  \cp ../build/mitgcmuv .
256    job_c20_375cpu < /dev/null >&! output.run &
257    
258    
259  ##########################################################################  ##########################################################################
260  ##########################################################################  ##########################################################################
261  # 510*510*6*50, 216-cpu cube sphere on the altices with efc  # 510*510*6*50, 1500-tile, 375-cpu, excludes land
262    # uses s1500t_17x51 configuration
263    # example for running on c17-c20 using arrayd
264    
265    cd MITgcm/verification/global_ocean.cs32x15/code
266    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
267    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
268    \cp SIZE.h_375 SIZE.h
269    \cp packages.conf_hr packages.conf
270    
271    cd ../build
272    \rm *
273    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
274    make depend
275    make -j
276    
277  setenv CVSROOT :pserver:cvsanon@mitgcm.org:/u/u0/gcmpack  cd ..
278  cvs login ( CVS password: cvsanon )  mkdir run
279  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/README_ice  cd run
280  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/code-mods  \rm *
281  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/matlab-grid-converter  \cp ../input/* .
282  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/input  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
283  cvs co -r checkpoint52d_pre MITgcm_contrib/high_res_cube/results  ln -sf ../../../../run_template/* .
284  cvs co -r checkpoint52d_pre MITgcm_code  \rm pickup*
285  cvs co -r checkpoint52d_pre MITgcm/verification/global_ocean.cs32x15  ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
286    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
287    \cp ../build/mitgcmuv .
288    job_c20_375cpu < /dev/null >&! output.run &
289    
290    
291    ##########################################################################
292    ##########################################################################
293    # 510*510*6*50, 1500-tile, 500-cpu, excludes land
294    # uses s1500t_17x51 configuration
295    # example for running on c17-c20 using arrayd
296    
297    cd MITgcm/verification/global_ocean.cs32x15/code
298    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
299    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
300    \cp SIZE.h_500 SIZE.h
301    \cp packages.conf_hr packages.conf
302    
303    cd ../build
304    \rm *
305    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
306    make depend
307    make -j
308    
309    cd ..
310    mkdir run
311    cd run
312    \rm *
313    \cp ../input/* .
314    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
315    ln -sf ../../../../run_template/* .
316    \rm pickup*
317    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
318    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
319    \cp ../build/mitgcmuv .
320    job_c19_500cpu < /dev/null >&! output.run &
321    
322    
323    ##########################################################################
324    ##########################################################################
325    # 510*510*6*50, 216-cpu cube sphere on cosmos
326    
327  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
328  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
329  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
330  \cp SIZE.h_216 SIZE.h  \cp SIZE.h_216 SIZE.h
331  \cp CPP_EEOPTIONS.h_mpi CPP_EEOPTIONS.h  \cp packages.conf_hr packages.conf
332  \rm mdsio_readfield.F  
333    module unload latest_intel80
334    module unload mpich-gm-intel80
335    module load latest_intel81
336    module load mpich-gm-intel81
337    
338    cd ../build
339    \rm *
340    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
341    make depend
342    make -j
343    
344    cd ..
345    mkdir run
346    cd run
347    \rm *
348    \cp ../input/* .
349    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
350    ln -sf ../../../../run_template/* .
351    \rm pickup*
352    ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
353    ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
354    \cp ../build/mitgcmuv .
355    bsub < job_cosmos
356    
357    
358    ##########################################################################
359    ##########################################################################
360    # 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
361    # requires input files in sudirectories run_template and ncep_rgau
362    # presently residing under orion:/tmp1/dmenem/cube
363    
364    cd MITgcm/verification/global_ocean.cs32x15/code
365    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
366    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
367    \cp SIZE.h_54 SIZE.h
368    \cp packages.conf_hr packages.conf
369    
370    cd ../build
371    \rm *
372    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
373    make depend
374    make -j
375    
376  cd ..  cd ..
377  mkdir build  mkdir run
378  cd build  cd run
379  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi  \rm *
380    \cp ../input/* .
381    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
382    qsub job_orion
383    
384    
385    ##########################################################################
386    ##########################################################################
387    # 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
388    # requires input files in sudirectories run_template and ncep_rgau
389    # presently residing under orion:/tmp1/dmenem/cube
390    
391    cd MITgcm/verification/global_ocean.cs32x15/code
392    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
393    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
394    \cp SIZE.h_41 SIZE.h
395    \cp packages.conf_hr packages.conf
396    
397    cd ../build
398    \rm *
399    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
400  make depend  make depend
401  make  make -j
402    
403    cd ..
404    mkdir run
405    cd run
406    \rm *
407    \cp ../input/* .
408    \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
409    qsub job_orion41
410    
411    
412    ##########################################################################
413    ##########################################################################
414    # 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
415    # requires input files in sudirectories run_template and ncep_rgau
416    # presently residing under orion:/tmp1/dmenem/cube
417    
418    cd MITgcm/verification/global_ocean.cs32x15/code
419    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
420    \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
421    \cp SIZE.h_50 SIZE.h
422    \cp packages.conf_hr packages.conf
423    
424    cd ../build
425    \rm *
426    ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
427    make depend
428    make -j
429    
430  cd ..  cd ..
431  mkdir run  mkdir run
432  cd run  cd run
433  \cp ../inp_thsice/* .  \rm *
434  \cp ../input/* .  \cp ../input/* .
435  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .
 \cp data_hr data  
 \cp data.pkg_hr data.pkg  
 \ln -sf ../../../../run_template/tile00* .  
 \ln -sf ../../../../run_template/LEV* .  
 \ln -sf ../../../../run_template/BATHY_18360x85_filled.bin .  
436  qsub job_orion  qsub job_orion
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