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revision 1.74 by dimitri, Thu Nov 2 06:05:17 2006 UTC revision 1.90 by dimitri, Wed Feb 7 01:30:48 2007 UTC
# Line 1  Line 1 
1    
2  Instructions for setting up a cube-sphere integration with sea-ice.  Instructions for setting up a cube-sphere integration with sea-ice.
3    
4    Forcing fields and other input files needed for the CS510
5    configuration can be obtained from
6    http://ecco2.org/products/model_setups/cs510.html
7    
8  =================  =================
9  UPDATES  UPDATES
10    
11  November 1, 2006: 216-CPU code for cube43  February 6, 2006: cube56, same as cube 50 with SEAICEuseFlooding
12  Martin's growth.F routine and Patrick's pkg/seaice diagnostics  
13    February 1, 2006: back to cube50 default (bottomDragQuadratic = 0.002)
14                      removed UVEL and VVEL from diagnostics
15    
16    January 5, 2006: cube51, like cube50 but with bottomDragQuadratic = 0.0012
17    
18    January 5, 2006: cube50, like cube48 but with snow advection
19    
20    December 30, 2006: updates for cube49, the first
21    "blend" integration.
22    
23    December 11, 2006: preparing for cube47, same as cube43
24    but with Arctic monthly river runoff climatology.
25    
26    December 5, 2006: 216-CPU code for cube46
27    Changed diagnostics to accomodate JMCs latest and some
28    changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
29    to speed up code.
30    
31    November 7, 2006: 216-CPU code for cube43
32    Bug fixes in growth.F routine and new set of diagnostics
33    
34  October 15, 2006: 216-CPU code for cube40  October 15, 2006: 216-CPU code for cube40
35    
# Line 24  for online T/S profile diagnostics all t Line 49  for online T/S profile diagnostics all t
49  see pkg/ecco/ecco_cost_init_fixed.F  see pkg/ecco/ecco_cost_init_fixed.F
50      pkg/ecco/cost_averagesfields.F      pkg/ecco/cost_averagesfields.F
51    
52    ##########################################################################
53    ##########################################################################
54    # Get forcing files, etc.
55    # Example below is for cube46 on /nobackup2a/menemenl
56    
57    cd /nobackup2a/menemenl
58    mkdir cube47
59    cd cube47
60    ln -sf ../run_template .
61    ln -sf ../ncep_rgau .
62    
63    
64  ##########################################################################  ##########################################################################
65  ##########################################################################  ##########################################################################
66  # getting the code from anonymous CVS server  # getting the code from anonymous CVS server
 #  
67    
68    bash or sh shell:    bash or sh shell:
69      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'      $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
# Line 52  cvs co MITgcm/verification/tutorial_held Line 87  cvs co MITgcm/verification/tutorial_held
87  ##########################################################################  ##########################################################################
88  ##########################################################################  ##########################################################################
89  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics  # 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
 # requires input files in sudirectories run_template and ncep_rgau  
 # these can be obained from lou:/u/menemenl/cube  
90    
91  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
92  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
# Line 63  cd MITgcm/verification/global_ocean.cs32 Line 96  cd MITgcm/verification/global_ocean.cs32
96    
97  cd ../build  cd ../build
98  \rm *  \rm *
99  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas  ../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
100  make depend  make depend
101  make -j  make -j
102    
# Line 76  cd run Line 109  cd run
109  ln -sf ../../../../run_template/* .  ln -sf ../../../../run_template/* .
110  \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*  \rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
111  \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t  \rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
112  ln -sf ../../../../run_template/pickup.0000000216.cube38 pickup.0000000216  ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
113  ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube38 pickup_seaice.0000000216  ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
114  \cp ../build/mitgcmuv .  \cp ../build/mitgcmuv .
115  qsub job_altix  qsub job_altix
116    
# Line 89  qsub job_altix Line 122  qsub job_altix
122  cd MITgcm/verification/global_ocean.cs32x15/code  cd MITgcm/verification/global_ocean.cs32x15/code
123  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
124  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .  \cp ../../../utils/exch2/code-mods/s12t_16x32/* .
125    \rm CPP_EEOPTIONS.h
126  cd ../build  cd ../build
127  \rm *  \rm *
128  ../../../tools/genmake2 -mods=../code  ../../../tools/genmake2 -mods=../code
# Line 109  comparison output is in: Line 143  comparison output is in:
143  to use matlab to look at the output  to use matlab to look at the output
144  matlab  matlab
145    
146  for fld={'VICEtave','UICEtave','HEFFtave','AREAtave','QSWtave', ...  for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
147           'QNETtave','FVtave','FUtave','EmPmRtave'}           'surForcT','oceTAUX','oceTAUY','surForcS'}
148      tmp=permute(readbin([fld{1} '.0000000020.data'],[32,6,32]),[1 3 2]);      tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
149      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause      cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
150  end  end
151    
152  heff=permute(readbin(['HEFFtave.0000000020.data'],[32,6,32]),[1 3 2]);  heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
153  mask=0*heff; mask(find(heff>.001))=1;  mask=0*heff; mask(find(heff>.001))=1;
154  uice=mask.*permute(readbin(['UICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
155  vice=mask.*permute(readbin(['VICEtave.0000000020.data'],[32,6,32]),[1 3 2]);  vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
156  clf  clf
157  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')  subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
158  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')  subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
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