Contents of /MITgcm_contrib/high_res_cube/README_ice

Instructions for setting up a cube-sphere integration with sea-ice.

Forcing fields and other input files needed for the CS510
configuration can be obtained from
http://ecco2.org/products/model_setups/cs510.html

=================
UPDATES

January 5, 2006: cube50, same as cube48 but with snow advection

December 30, 2006: updates for cube49, the first
"blend" integration.

December 11, 2006: preparing for cube47, same as cube43
but with Arctic monthly river runoff climatology.

December 5, 2006: 216-CPU code for cube46
Changed diagnostics to accomodate JMCs latest and some
changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
to speed up code.

November 7, 2006: 216-CPU code for cube43
Bug fixes in growth.F routine and new set of diagnostics

October 15, 2006: 216-CPU code for cube40

September 28, 2006: 216-CPU code for cube38

September 4, 2006
Modified 32*32*6*15 experiments to use grid_cs32.* files from
 verification/tutorial_held_suarez_cs/input instead of
 tile* files from verification/global_ocean.cs32x15/input

August 8, 2006: 216-CPU code and input used for cube37
using "June 10, 2006" MITgcm code.

for online T/S profile diagnostics all that is needed is
  profiles_init_fixed
  profiles_inloop
see pkg/ecco/ecco_cost_init_fixed.F
    pkg/ecco/cost_averagesfields.F

##########################################################################
##########################################################################
# Get forcing files, etc.
# Example below is for cube46 on /nobackup2a/menemenl

cd /nobackup2a/menemenl
mkdir cube47
cd cube47
ln -sf ../run_template .
ln -sf ../ncep_rgau .


##########################################################################
##########################################################################
# getting the code from anonymous CVS server

  bash or sh shell:
    $ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

  tcsh or csh shell:
    $ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
    $ cvs login 
      ( enter the CVS password: "cvsanon" )

cvs co MITgcm_contrib/high_res_cube/README_ice
cvs co MITgcm_contrib/high_res_cube/code-mods
cvs co MITgcm_contrib/high_res_cube/input
cvs co MITgcm_contrib/high_res_cube/results
cvs co MITgcm_code
cvs co MITgcm/verification/global_ocean.cs32x15
cvs co MITgcm/verification/tutorial_held_suarez_cs/input


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
\rm bathy_Hmin50.bin *192_94* *cs32* *.m lev* tren* job_c* job_altix150 job_altix92_54t
ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
qsub job_altix


##########################################################################
##########################################################################
# 32*32*6*15, 1-cpu cube sphere

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt

comparison output is in:
../../../../MITgcm_contrib/high_res_cube/results/output.txt

to use matlab to look at the output
matlab

for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
         'surForcT','oceTAUX','oceTAUY','surForcS'}
    tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
    cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
end

heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
mask=0*heff; mask(find(heff>.001))=1;
uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
clf
subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')


##########################################################################
##########################################################################
# 32*32*6*15, 17-tile, 1-cpu cube sphere experiment

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../code_alt/code.176t_8x4/* .
cd ../build
\rm *
../../../tools/genmake2 -mods=../code
make depend
make
cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
../build/mitgcmuv >& output.txt


##########################################################################
##########################################################################
# 32*32*6*15, 2-cpu cube sphere on the altices with ifort

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
\cp SIZE.h_mpi SIZE.h

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../../tutorial_held_suarez_cs/input/grid* .
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
mpirun -np 2 ../build/mitgcmuv


##########################################################################
##########################################################################
# 510*510*6*50, 54-tile, 54-cpu cube sphere on the altices with efc
# starting with pickup file from end of 1992
# requires input files in sudirectories run_template and ncep_rgau

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_altix92_54t


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 150-cpu, excludes land
# uses s1500t_17x51 configuration

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_150 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv mitgcmuv150
qsub job_altix150


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 375-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_375 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c20_375cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 500-cpu, excludes land
# uses s1500t_17x51 configuration
# example for running on c17-c20 using arrayd

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_500 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
job_c19_500cpu < /dev/null >&! output.run &


##########################################################################
##########################################################################
# 510*510*6*50, 216-cpu cube sphere on cosmos

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_216 SIZE.h
\cp packages.conf_hr packages.conf

module unload latest_intel80
module unload mpich-gm-intel80
module load latest_intel81
module load mpich-gm-intel81

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
ln -sf ../../../../run_template/* .
\rm pickup*
ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
ln -sf  ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
\cp ../build/mitgcmuv .
bsub < job_cosmos


##########################################################################
##########################################################################
# 510*510*6*50, 216-tile, 54-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
\cp SIZE.h_54 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion


##########################################################################
##########################################################################
# 510*510*6*50, 205-tile, 41-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
\cp SIZE.h_41 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion41


##########################################################################
##########################################################################
# 510*510*6*50, 1500-tile, 50-cpu cube sphere on the altices with efc
# requires input files in sudirectories run_template and ncep_rgau
# presently residing under orion:/tmp1/dmenem/cube

cd MITgcm/verification/global_ocean.cs32x15/code
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
\cp SIZE.h_50 SIZE.h
\cp packages.conf_hr packages.conf

cd ../build
\rm *
../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j

cd ..
mkdir run
cd run
\rm *
\cp ../input/* .
\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
qsub job_orion
1	Instructions for setting up a cube-sphere integration with sea-ice.
2
3	Forcing fields and other input files needed for the CS510
4	configuration can be obtained from
5	http://ecco2.org/products/model_setups/cs510.html
6
7	=================
8	UPDATES
9
10	January 5, 2006: cube50, same as cube48 but with snow advection
11
12	December 30, 2006: updates for cube49, the first
13	"blend" integration.
14
15	December 11, 2006: preparing for cube47, same as cube43
16	but with Arctic monthly river runoff climatology.
17
18	December 5, 2006: 216-CPU code for cube46
19	Changed diagnostics to accomodate JMCs latest and some
20	changes to code-mods/CPP_EEOPTIONS.h and W2_OPTIONS.h
21	to speed up code.
22
23	November 7, 2006: 216-CPU code for cube43
24	Bug fixes in growth.F routine and new set of diagnostics
25
26	October 15, 2006: 216-CPU code for cube40
27
28	September 28, 2006: 216-CPU code for cube38
29
30	September 4, 2006
31	Modified 3232615 experiments to use grid_cs32. files from
32	verification/tutorial_held_suarez_cs/input instead of
33	tile* files from verification/global_ocean.cs32x15/input
34
35	August 8, 2006: 216-CPU code and input used for cube37
36	using "June 10, 2006" MITgcm code.
37
38	for online T/S profile diagnostics all that is needed is
39	profiles_init_fixed
40	profiles_inloop
41	see pkg/ecco/ecco_cost_init_fixed.F
42	pkg/ecco/cost_averagesfields.F
43
44	##########################################################################
45	##########################################################################
46	# Get forcing files, etc.
47	# Example below is for cube46 on /nobackup2a/menemenl
48
49	cd /nobackup2a/menemenl
50	mkdir cube47
51	cd cube47
52	ln -sf ../run_template .
53	ln -sf ../ncep_rgau .
54
55
56	##########################################################################
57	##########################################################################
58	# getting the code from anonymous CVS server
59
60	bash or sh shell:
61	$ export CVSROOT=':pserver:cvsanon@mitgcm.org:/u/gcmpack'
62	$ cvs login
63	( enter the CVS password: "cvsanon" )
64
65	tcsh or csh shell:
66	$ setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
67	$ cvs login
68	( enter the CVS password: "cvsanon" )
69
70	cvs co MITgcm_contrib/high_res_cube/README_ice
71	cvs co MITgcm_contrib/high_res_cube/code-mods
72	cvs co MITgcm_contrib/high_res_cube/input
73	cvs co MITgcm_contrib/high_res_cube/results
74	cvs co MITgcm_code
75	cvs co MITgcm/verification/global_ocean.cs32x15
76	cvs co MITgcm/verification/tutorial_held_suarez_cs/input
77
78
79	##########################################################################
80	##########################################################################
81	# 5105106*50, 216-cpu cube sphere on altix with ifort and pkg/diagnostics
82
83	cd MITgcm/verification/global_ocean.cs32x15/code
84	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
85	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
86	\cp SIZE.h_216 SIZE.h
87	\cp packages.conf_hr packages.conf
88
89	cd ../build
90	\rm *
91	../../../tools/genmake2 -mods=../code -of ../code/linux_ia64_ifort+mpi_altix_nas
92	make depend
93	make -j
94
95	cd ..
96	mkdir run
97	cd run
98	\rm *
99	\cp ../input/* .
100	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
101	ln -sf ../../../../run_template/* .
102	\rm pickup* eedata.mth data.pkg data.seaice data.exf_clim data.exf data.mnc data pr*
103	\rm bathy_Hmin50.bin 192_94 cs32 .m lev tren* job_c* job_altix150 job_altix92_54t
104	ln -sf ../../../../run_template/pickup.0000000216.cube49 pickup.0000000216
105	ln -sf ../../../../run_template/pickup_seaice.0000000216.cube48 pickup_seaice.0000000216
106	\cp ../build/mitgcmuv .
107	qsub job_altix
108
109
110	##########################################################################
111	##########################################################################
112	# 32326*15, 1-cpu cube sphere
113
114	cd MITgcm/verification/global_ocean.cs32x15/code
115	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
116	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
117	cd ../build
118	\rm *
119	../../../tools/genmake2 -mods=../code
120	make depend
121	make
122	cd ..
123	mkdir run
124	cd run
125	\rm *
126	\cp ../../tutorial_held_suarez_cs/input/grid* .
127	\cp ../input/* .
128	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
129	../build/mitgcmuv >& output.txt
130
131	comparison output is in:
132	../../../../MITgcm_contrib/high_res_cube/results/output.txt
133
134	to use matlab to look at the output
135	matlab
136
137	for fld={'SIuice','SIvice','SIheff','SIarea','oceQsw', ...
138	'surForcT','oceTAUX','oceTAUY','surForcS'}
139	tmp=permute(readbin([fld{1} '.0000000072.data'],[32,6,32]),[1 3 2]);
140	cx=[min(tmp(:)) max(tmp(:))]; clf, plot_cube, title(fld{1}), pause
141	end
142
143	heff=permute(readbin(['SIheff.0000000072.data'],[32,6,32]),[1 3 2]);
144	mask=0*heff; mask(find(heff>.001))=1;
145	uice=mask.*permute(readbin(['SIuice.0000000072.data'],[32,6,32]),[1 3 2]);
146	vice=mask.*permute(readbin(['SIvice.0000000072.data'],[32,6,32]),[1 3 2]);
147	clf
148	subplot(221), mypcolor(uice(:,:,3)'); colorbar, title('uice, tile 3')
149	subplot(222), mypcolor(uice(:,:,6)'); colorbar, title('uice, tile 6')
150	subplot(223), mypcolor(vice(:,:,3)'); colorbar, title('vice, tile 3')
151	subplot(224), mypcolor(vice(:,:,6)'); colorbar, title('vice, tile 6')
152
153
154	##########################################################################
155	##########################################################################
156	# 32326*15, 17-tile, 1-cpu cube sphere experiment
157
158	cd MITgcm/verification/global_ocean.cs32x15/code
159	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
160	\cp ../code_alt/code.176t_8x4/* .
161	cd ../build
162	\rm *
163	../../../tools/genmake2 -mods=../code
164	make depend
165	make
166	cd ..
167	mkdir run
168	cd run
169	\rm *
170	\cp ../../tutorial_held_suarez_cs/input/grid* .
171	\cp ../input/* .
172	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
173	../build/mitgcmuv >& output.txt
174
175
176	##########################################################################
177	##########################################################################
178	# 32326*15, 2-cpu cube sphere on the altices with ifort
179
180	cd MITgcm/verification/global_ocean.cs32x15/code
181	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
182	\cp ../../../utils/exch2/code-mods/s12t_16x32/* .
183	\cp SIZE.h_mpi SIZE.h
184
185	cd ../build
186	\rm *
187	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
188	make depend
189	make -j
190
191	cd ..
192	mkdir run
193	cd run
194	\rm *
195	\cp ../../tutorial_held_suarez_cs/input/grid* .
196	\cp ../input/* .
197	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
198	mpirun -np 2 ../build/mitgcmuv
199
200
201	##########################################################################
202	##########################################################################
203	# 5105106*50, 54-tile, 54-cpu cube sphere on the altices with efc
204	# starting with pickup file from end of 1992
205	# requires input files in sudirectories run_template and ncep_rgau
206
207	cd MITgcm/verification/global_ocean.cs32x15/code
208	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
209	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s54t_170x170/* .
210	\cp packages.conf_hr packages.conf
211
212	cd ../build
213	\rm *
214	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
215	make depend
216	make -j
217
218	cd ..
219	mkdir run
220	cd run
221	\rm *
222	\cp ../input/* .
223	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
224	qsub job_altix92_54t
225
226
227	##########################################################################
228	##########################################################################
229	# 5105106*50, 1500-tile, 150-cpu, excludes land
230	# uses s1500t_17x51 configuration
231
232	cd MITgcm/verification/global_ocean.cs32x15/code
233	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
234	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
235	\cp SIZE.h_150 SIZE.h
236	\cp packages.conf_hr packages.conf
237
238	cd ../build
239	\rm *
240	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
241	make depend
242	make -j
243
244	cd ..
245	mkdir run
246	cd run
247	\rm *
248	\cp ../input/* .
249	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
250	ln -sf ../../../../run_template/* .
251	\rm pickup*
252	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
253	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
254	\cp ../build/mitgcmuv mitgcmuv150
255	qsub job_altix150
256
257
258	##########################################################################
259	##########################################################################
260	# 5105106*50, 1500-tile, 375-cpu, excludes land
261	# uses s1500t_17x51 configuration
262	# example for running on c17-c20 using arrayd
263
264	cd MITgcm/verification/global_ocean.cs32x15/code
265	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
266	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
267	\cp SIZE.h_375 SIZE.h
268	\cp packages.conf_hr packages.conf
269
270	cd ../build
271	\rm *
272	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
273	make depend
274	make -j
275
276	cd ..
277	mkdir run
278	cd run
279	\rm *
280	\cp ../input/* .
281	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
282	ln -sf ../../../../run_template/* .
283	\rm pickup*
284	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
285	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
286	\cp ../build/mitgcmuv .
287	job_c20_375cpu < /dev/null >&! output.run &
288
289
290	##########################################################################
291	##########################################################################
292	# 5105106*50, 1500-tile, 375-cpu, excludes land
293	# uses s1500t_17x51 configuration
294	# example for running on c17-c20 using arrayd
295
296	cd MITgcm/verification/global_ocean.cs32x15/code
297	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
298	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
299	\cp SIZE.h_375 SIZE.h
300	\cp packages.conf_hr packages.conf
301
302	cd ../build
303	\rm *
304	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
305	make depend
306	make -j
307
308	cd ..
309	mkdir run
310	cd run
311	\rm *
312	\cp ../input/* .
313	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
314	ln -sf ../../../../run_template/* .
315	\rm pickup*
316	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
317	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
318	\cp ../build/mitgcmuv .
319	job_c20_375cpu < /dev/null >&! output.run &
320
321
322	##########################################################################
323	##########################################################################
324	# 5105106*50, 1500-tile, 500-cpu, excludes land
325	# uses s1500t_17x51 configuration
326	# example for running on c17-c20 using arrayd
327
328	cd MITgcm/verification/global_ocean.cs32x15/code
329	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
330	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
331	\cp SIZE.h_500 SIZE.h
332	\cp packages.conf_hr packages.conf
333
334	cd ../build
335	\rm *
336	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
337	make depend
338	make -j
339
340	cd ..
341	mkdir run
342	cd run
343	\rm *
344	\cp ../input/* .
345	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
346	ln -sf ../../../../run_template/* .
347	\rm pickup*
348	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
349	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
350	\cp ../build/mitgcmuv .
351	job_c19_500cpu < /dev/null >&! output.run &
352
353
354	##########################################################################
355	##########################################################################
356	# 5105106*50, 216-cpu cube sphere on cosmos
357
358	cd MITgcm/verification/global_ocean.cs32x15/code
359	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
360	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
361	\cp SIZE.h_216 SIZE.h
362	\cp packages.conf_hr packages.conf
363
364	module unload latest_intel80
365	module unload mpich-gm-intel80
366	module load latest_intel81
367	module load mpich-gm-intel81
368
369	cd ../build
370	\rm *
371	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia32_ifort+mpi_cosmos
372	make depend
373	make -j
374
375	cd ..
376	mkdir run
377	cd run
378	\rm *
379	\cp ../input/* .
380	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
381	ln -sf ../../../../run_template/* .
382	\rm pickup*
383	ln -sf ../../../../run_template/pickup.0000316440.cube19 pickup.0000000216
384	ln -sf ../../../../run_template/pickup_seaice.0000316440.cube19 pickup_seaice.0000000216
385	\cp ../build/mitgcmuv .
386	bsub < job_cosmos
387
388
389	##########################################################################
390	##########################################################################
391	# 5105106*50, 216-tile, 54-cpu cube sphere on the altices with efc
392	# requires input files in sudirectories run_template and ncep_rgau
393	# presently residing under orion:/tmp1/dmenem/cube
394
395	cd MITgcm/verification/global_ocean.cs32x15/code
396	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
397	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .
398	\cp SIZE.h_54 SIZE.h
399	\cp packages.conf_hr packages.conf
400
401	cd ../build
402	\rm *
403	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
404	make depend
405	make -j
406
407	cd ..
408	mkdir run
409	cd run
410	\rm *
411	\cp ../input/* .
412	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
413	qsub job_orion
414
415
416	##########################################################################
417	##########################################################################
418	# 5105106*50, 205-tile, 41-cpu cube sphere on the altices with efc
419	# requires input files in sudirectories run_template and ncep_rgau
420	# presently residing under orion:/tmp1/dmenem/cube
421
422	cd MITgcm/verification/global_ocean.cs32x15/code
423	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
424	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s205t_85x85/* .
425	\cp SIZE.h_41 SIZE.h
426	\cp packages.conf_hr packages.conf
427
428	cd ../build
429	\rm *
430	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
431	make depend
432	make -j
433
434	cd ..
435	mkdir run
436	cd run
437	\rm *
438	\cp ../input/* .
439	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
440	qsub job_orion41
441
442
443	##########################################################################
444	##########################################################################
445	# 5105106*50, 1500-tile, 50-cpu cube sphere on the altices with efc
446	# requires input files in sudirectories run_template and ncep_rgau
447	# presently residing under orion:/tmp1/dmenem/cube
448
449	cd MITgcm/verification/global_ocean.cs32x15/code
450	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .
451	\cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s1500t_17x51/* .
452	\cp SIZE.h_50 SIZE.h
453	\cp packages.conf_hr packages.conf
454
455	cd ../build
456	\rm *
457	../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
458	make depend
459	make -j
460
461	cd ..
462	mkdir run
463	cd run
464	\rm *
465	\cp ../input/* .
466	\cp ../../../../MITgcm_contrib/high_res_cube/input/* .
467	qsub job_orion