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heimbach |
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25-Sep-2008 |
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heimbach@mit.edu, gforget@mit.edu, dmenemenlis@gmail.com, hzhang@caltech.edu |
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# The following is a description of the CS510 |
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# adjoint-based state estimation setup. |
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# It is based on checkpoint61d. |
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# A prototype setup ran successfully in a 360-proc. config. |
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# on beagle.darwinproject.mit.edu |
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# Stable run for 10-days. sensitivity growth for 1 month |
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# (but not much tweaking with viscosity etc.) |
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# |
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# Default setup for columbia set up to use 450 processors of tile size 34x34. |
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# 0. Set some variables |
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set mitgcm_basedir = [ for example ~/MITgcm_c61d ] |
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# 1. Check out clean MITgcm checkpoint from CVS |
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cvs co -d MITgcm_c61d -r checkpoint61d MITgcm |
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zhc |
1.6 |
#or latest code |
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#cvs co MITgcm_code |
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heimbach |
1.1 |
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# 2. Check out config. files for this setup: |
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cvs co MITgcm_contrib/high_res_cube/cs510_adjoint |
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# 3. (I prefer it that way, but a matter of taste), |
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\cp -r MITgcm_contrib/high_res_cube/cs510_adjoint $mitgcm_basedir/verification/. |
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zhc |
1.6 |
# 4. Prepare build; we now need cyrus-makedepend |
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heimbach |
1.1 |
cd $mitgcm_basedir/tools/cyrus-imapd-makedepend |
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./configure |
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make |
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zhc |
1.6 |
# 5. Make sure to use default topology (or use different one) |
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heimbach |
1.1 |
cd $mitgcm_basedir/verification/cs510_adjoint/code_ad/ |
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zhc |
1.6 |
#no more topo needed |
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#\cp -f topol_360_85x51/* . |
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zhc |
1.5 |
#level options: 50 levels |
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\cp -f SIZE.h_lev50 SIZE.h |
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zhc |
1.4 |
#DIVA options: no_diva |
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\cp -f ECCO_CPPOPTIONS.h_nodiva ECCO_CPPOPTIONS.h |
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zhc |
1.6 |
#Or DIVA |
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\cp -f ECCO_CPPOPTIONS.h_diva ECCO_CPPOPTIONS.h |
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heimbach |
1.1 |
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zhc |
1.6 |
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# 6. Build model |
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heimbach |
1.1 |
cd $mitgcm_basedir/verification/cs510_adjoint/build_ad/ |
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zhc |
1.6 |
#DIVA options: no_diva |
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../../../tools/genmake2 "-of" "linux_ia64_ifort+mpi_altix_nas" \ |
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heimbach |
1.1 |
"-makedepend" "../../../tools/cyrus-imapd-makedepend/makedepend" \ |
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"-mods" "../code_ad" |
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zhc |
1.6 |
#Or DIVA |
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#../../../tools/genmake2 -of linux_ia64_ifort+mpi_altix_nas \ |
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zhc |
1.4 |
# -adof ../../../tools/adjoint_options/adjoint_diva_mpi \ |
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# -makedepend ../../../tools/cyrus-imapd-makedepend/makedepend -mods ../code_ad |
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heimbach |
1.1 |
make depend |
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make adtaf |
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make -j adall |
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zhc |
1.6 |
# 7. Run model |
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zhc |
1.2 |
cd .. |
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mkdir run |
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cd run |
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ln -sf ../build_ad/mitgcmuv_ad . |
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zhc |
1.6 |
cp -pf ../input_ad/* . |
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#On Columbia |
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zhc |
1.4 |
ln -sf /nobackup2a/menemenl/cs510_ad_test/MITgcm/verification/cs510_adjoint/input_fields/* . |
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ln -sf /nobackup2a/menemenl/forcing/cube78_forcing . |
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zhc |
1.6 |
#Or on Pleiades |
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#ln -sf /nobackupp10/zhangh/cs510_ad_test/MITgcm/verification/cs510_adjoint/input_fields/* . |
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#ln -sf /nobackupp10/zhangh/forcing/cube78_forcing . |
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zhc |
1.4 |
#change data*... |
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zhc |
1.5 |
#level 50 |
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\cp -f data.err_lev50 data.err |
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\cp -f data.ecco_lev50 data.ecco |
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\cp -f data_lev50 data |
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zhc |
1.4 |
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zhc |
1.2 |
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#change jobfile: cs510_adj_run |
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zhc |
1.6 |
#On Columbia |
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qsub cs510_adj_run_Columbia |
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#Or on Pleiades |
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#qsub cs510_adj_run_Pleiades |
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