| 1 |
dimitri |
1.11 |
============== |
| 2 |
dimitri |
1.12 |
# interactive 90x90x1342 tile configuration with newer MITgcm code |
| 3 |
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cd ~/llc_1080 |
| 4 |
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cvs co MITgcm_contrib/llc_hires/llc_1080 |
| 5 |
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cvs co -r checkpoint66h MITgcm_code |
| 6 |
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qsub -I -q long -l select=48:ncpus=28:model=bro,walltime=120:00:00 -m abe |
| 7 |
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module purge |
| 8 |
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module load comp-intel/2016.2.181 mpi-sgi/mpt.2.15r20 |
| 9 |
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cd ~/llc_1080/MITgcm |
| 10 |
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mkdir build run |
| 11 |
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lfs setstripe -c -1 run |
| 12 |
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cd build |
| 13 |
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cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_90x90x1342 SIZE.h |
| 14 |
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../tools/genmake2 -of \ |
| 15 |
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../../MITgcm_contrib/llc_hires/llc_1080/code/linux_amd64_ifort+mpi_ice_nas \ |
| 16 |
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-mpi -mods ../../MITgcm_contrib/llc_hires/llc_1080/code |
| 17 |
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make depend |
| 18 |
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make -j 56 |
| 19 |
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cd ../run |
| 20 |
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ln -sf ../build/mitgcmuv . |
| 21 |
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ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* . |
| 22 |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
| 23 |
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ln -sf ~dmenemen/llc_1080/MITgcm/run_2011/pick*354240* . |
| 24 |
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cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* . |
| 25 |
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mv data.exch2_90x90x1342 data.exch2 |
| 26 |
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mpiexec -n 1342 ./mitgcmuv & |
| 27 |
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| 28 |
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============== |
| 29 |
dimitri |
1.11 |
# interactive 90x90x1342 tile configuration from scratch |
| 30 |
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cd ~/llc_1080 |
| 31 |
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cvs co MITgcm_contrib/llc_hires/llc_1080 |
| 32 |
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cvs co -r checkpoint64p MITgcm_code |
| 33 |
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qsub -I -q long -l select=48:ncpus=28:model=bro,walltime=120:00:00 -m abe |
| 34 |
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module purge |
| 35 |
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module load comp-intel/2016.2.181 mpi-sgi/mpt.2.15r20 |
| 36 |
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cd ~/llc_1080/MITgcm |
| 37 |
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mkdir build run |
| 38 |
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lfs setstripe -c -1 run |
| 39 |
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cd build |
| 40 |
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cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_90x90x1342 SIZE.h |
| 41 |
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../tools/genmake2 -of \ |
| 42 |
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../../MITgcm_contrib/llc_hires/llc_1080/code/linux_amd64_ifort+mpi_ice_nas \ |
| 43 |
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-mpi -mods ../../MITgcm_contrib/llc_hires/llc_1080/code |
| 44 |
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make depend |
| 45 |
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make -j 16 |
| 46 |
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cd ../run |
| 47 |
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ln -sf ../build/mitgcmuv . |
| 48 |
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ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* . |
| 49 |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
| 50 |
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ln -sf ~dmenemen/llc_1080/MITgcm/run_2011/pick*354240* . |
| 51 |
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cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* . |
| 52 |
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mv data.exch2_90x90x1342 data.exch2 |
| 53 |
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mpiexec -n 1342 ./mitgcmuv & |
| 54 |
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| 55 |
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===================== |
| 56 |
dimitri |
1.1 |
For interactive session, Ivy Bridge nodes: |
| 57 |
dimitri |
1.13 |
qsub -I -q debug -l select=48:ncpus=28:model=bro,walltime=02:00:00 -m abe -M email |
| 58 |
dimitri |
1.7 |
qsub -I -q devel -l select=170:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M email |
| 59 |
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qsub -I -q long -l select=170:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M email |
| 60 |
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qsub -I -q long -l select=170:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M email |
| 61 |
dimitri |
1.1 |
|
| 62 |
dimitri |
1.6 |
============== |
| 63 |
dimitri |
1.7 |
# 60x60x2872 tile configuration |
| 64 |
dimitri |
1.6 |
|
| 65 |
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cd ~/llc_1080 |
| 66 |
dimitri |
1.10 |
cvs co -r checkpoint64p MITgcm_code |
| 67 |
dimitri |
1.6 |
cvs co MITgcm_contrib/llc_hires/llc_1080 |
| 68 |
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cd MITgcm |
| 69 |
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module purge |
| 70 |
dimitri |
1.7 |
module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0 |
| 71 |
dimitri |
1.6 |
mkdir build run |
| 72 |
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lfs setstripe -c -1 run |
| 73 |
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cd build |
| 74 |
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cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_60x60x2872 SIZE.h |
| 75 |
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../tools/genmake2 -of \ |
| 76 |
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../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
| 77 |
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'../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async' |
| 78 |
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make depend |
| 79 |
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make -j 16 |
| 80 |
dimitri |
1.9 |
cd ~/llc_1080/MITgcm/run |
| 81 |
dimitri |
1.6 |
ln -sf ../build/mitgcmuv . |
| 82 |
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ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* . |
| 83 |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
| 84 |
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cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* . |
| 85 |
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mv data.exch2_60x60x2872 data.exch2 |
| 86 |
dimitri |
1.8 |
export MPI_NUM_MEMORY_REGIONS=256 |
| 87 |
dimitri |
1.6 |
mpiexec -n 3400 ./mitgcmuv |
| 88 |
dimitri |
1.1 |
|
| 89 |
|
|
============== |
| 90 |
dimitri |
1.7 |
# 90x90x1342 tile configuration |
| 91 |
dimitri |
1.1 |
|
| 92 |
dimitri |
1.3 |
cd ~/llc_1080 |
| 93 |
dimitri |
1.1 |
cvs co MITgcm_code |
| 94 |
dimitri |
1.3 |
cvs co MITgcm_contrib/llc_hires/llc_1080 |
| 95 |
dimitri |
1.1 |
cd MITgcm |
| 96 |
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module purge |
| 97 |
dimitri |
1.6 |
module load comp-intel/2011.2 mpi-sgi/mpt.2.06r6 netcdf/4.0 |
| 98 |
dimitri |
1.1 |
mkdir build run |
| 99 |
dimitri |
1.3 |
lfs setstripe -c -1 run |
| 100 |
dimitri |
1.1 |
cd build |
| 101 |
dimitri |
1.3 |
cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_90x90x1342 SIZE.h |
| 102 |
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../tools/genmake2 -of \ |
| 103 |
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../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
| 104 |
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'../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async' |
| 105 |
dimitri |
1.1 |
make depend |
| 106 |
dimitri |
1.6 |
make -j 16 |
| 107 |
dimitri |
1.1 |
cd ../run |
| 108 |
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ln -sf ../build/mitgcmuv . |
| 109 |
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ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* . |
| 110 |
dimitri |
1.5 |
#ln -sf /nobackup/dmenemen/forcing/era_interim/EIG_*_2* . |
| 111 |
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#ln -sf /nobackup/dmenemen/forcing/era_interim_corrected/EIG_dlw_sub5p_2* . |
| 112 |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
| 113 |
dimitri |
1.3 |
cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* . |
| 114 |
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mv data.exch2_90x90x1342 data.exch2 |
| 115 |
dimitri |
1.8 |
export MPI_NUM_MEMORY_REGIONS=256 |
| 116 |
dimitri |
1.3 |
mpiexec -n 1600 ./mitgcmuv |
| 117 |
dimitri |
1.1 |
|
| 118 |
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============== |
| 119 |
dimitri |
1.13 |
# 90x90x1342 tile test configuration |
| 120 |
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| 121 |
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cd ~/llc_1080_test |
| 122 |
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cvs co MITgcm_code |
| 123 |
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cvs co MITgcm_contrib/llc_hires/llc_1080 |
| 124 |
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cd MITgcm |
| 125 |
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module purge |
| 126 |
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module load comp-intel/2016.2.181 mpi-sgi/mpt.2.15r20 |
| 127 |
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mkdir build run |
| 128 |
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lfs setstripe -c -1 run |
| 129 |
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cd build |
| 130 |
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cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_90x90x1342 SIZE.h |
| 131 |
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../tools/genmake2 -of \ |
| 132 |
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../../MITgcm_contrib/llc_hires/llc_1080/code/linux_amd64_ifort+mpi_ice_nas \ |
| 133 |
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-mpi -mods ../../MITgcm_contrib/llc_hires/llc_1080/code |
| 134 |
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make depend |
| 135 |
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make -j 16 |
| 136 |
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cd ../run |
| 137 |
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ln -sf ../build/mitgcmuv . |
| 138 |
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ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* . |
| 139 |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
| 140 |
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cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* . |
| 141 |
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mv data.exch2_90x90x1342 data.exch2 |
| 142 |
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mpiexec -n 1342 ./mitgcmuv |
| 143 |
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| 144 |
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| 145 |
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============== |
| 146 |
dimitri |
1.1 |
|
| 147 |
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look at output |
| 148 |
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| 149 |
dimitri |
1.4 |
for ts=[50760] |
| 150 |
dimitri |
1.1 |
fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],1080); |
| 151 |
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clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar |
| 152 |
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title(ts) |
| 153 |
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pause(.1) |
| 154 |
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end |
| 155 |
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| 156 |
dimitri |
1.4 |
ts=50760; |
| 157 |
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for fld={'S''T','U','V','W','HEFF'} |
| 158 |
dimitri |
1.1 |
tmp=quikread_llc([fld{1} '.' myint2str(ts,10) '.data'],1080); |
| 159 |
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clf,quikplot_llc(tmp),thincolorbar |
| 160 |
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title(fld{1}) |
| 161 |
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pause |
| 162 |
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end |
| 163 |
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| 164 |
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============== |
| 165 |
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| 166 |
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to determine empty tiles: |
| 167 |
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grep Empty STDOUT.* |
| 168 |
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| 169 |
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============== |
| 170 |
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| 171 |
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memory requirements: |
| 172 |
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nPx sNx sNy nSx node0 total rank0 rank1 |
| 173 |
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702 60 60 6 17,642,924kb 770,168,568kb |
| 174 |
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468 60 60 9 22,083,004kb 643,301,784kb |
| 175 |
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468 180 180 1 24,719,776kb 720,415,552kb 1678MB 1563MB |
| 176 |
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351 60 60 12 26,660,020kb 582,815,544kb |
| 177 |
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351 120 120 3 25,110,324kb 548,819,772kb 1711MB 1586MB |
| 178 |
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351 120 120 3 6,543,780kb 56,729,484kb - with globalFiles - run out of time |
| 179 |
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325 54 54 16 29,029,744kb 587,831,344kb |
| 180 |
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325 216 216 1 29,249,232kb 426,554,484kb - node ran out of memory and crashed |
| 181 |
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234 90 90 8 30,590,952kb 431,252,200kb - node ran out of memory and crashed |
| 182 |
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234 180 180 2 27,682,360kb 307,181,152kb - node ran out of memory and crashed |
| 183 |
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| 184 |
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============= |
| 185 |
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factor(3240) = 2 2 2 3 3 3 3 5 |
| 186 |
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factor(1080) = 2 2 2 3 3 3 5 |
| 187 |
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| 188 |
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2 = 2 |
| 189 |
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3 = 3 |
| 190 |
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2*2 = 4 |
| 191 |
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5 = 5 |
| 192 |
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2*3 = 6 |
| 193 |
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2*2*2 = 8 |
| 194 |
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3*3 = 9 |
| 195 |
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2*5 = 10 |
| 196 |
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2*2*3 = 12 |
| 197 |
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3*5 = 15 |
| 198 |
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2*3*3 = 18 |
| 199 |
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2*2*5 = 20 |
| 200 |
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2*2*2*3 = 24 |
| 201 |
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3*3*3 = 27 |
| 202 |
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2*3*5 = 30 |
| 203 |
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2*2*3*3 = 36 * 30 |
| 204 |
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2*2*2*5 = 40 * 27 |
| 205 |
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3*3*5 = 45 * 24 |
| 206 |
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2*3*3*3 = 54 * 20 |
| 207 |
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2*2*3*5 = 60 * 18 |
| 208 |
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2*2*2*3*3 = 72 * 15 |
| 209 |
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2*3*3*5 = 90 * 12 |
| 210 |
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2*2*3*3*3 = 108 * 10 |
| 211 |
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2*2*2*3*5 = 120 * 9 |
| 212 |
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3*3*3*5 = 135 * 8 |
| 213 |
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2*2*3*3*5 = 180 * 6 |
| 214 |
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2*2*2*3*3*3 = 216 * 5 |
| 215 |
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2*3*3*3*5 = 270 * 4 |
| 216 |
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2*2*2*3*3*5 = 360 * 3 |
| 217 |
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2*2*3*3*3*5 = 540 * 2 |
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