For interactive session, Ivy Bridge nodes: qsub -I -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M menemenlis@jpl.nasa.gov qsub -I -q long -l select=80:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M menemenlis@jpl.nasa.gov qsub -I -q long -l select=:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 For batch submission: qsub -q devel -l select=24:ncpus=20:model=ivy,walltime=02:00:00 runscript qsub qsub_llc1080_468.csh These will give you 24 x 20 = 480 cores. ============== cd ~/llc_1080 cvs co MITgcm_code cvs co MITgcm_contrib/llc_hires/llc_1080 cd MITgcm module purge module load comp-intel/2011.2 mpi-sgi/mpt.2.06a67 netcdf/4.0 mkdir build run lfs setstripe -c -1 run cd build cp ../../MITgcm_contrib/llc_hires/llc_1080/code/SIZE.h_90x90x1342 SIZE.h ../tools/genmake2 -of \ ../../MITgcm_contrib/llc_hires/llc_1080/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ '../../MITgcm_contrib/llc_hires/llc_1080/code ../../MITgcm_contrib/llc_hires/llc_1080/code-async' make depend make -j 30 cd ../run ln -sf ../build/mitgcmuv . ln -sf /nobackup/dmenemen/tarballs/llc_1080/run_template/* . ln -sf /nobackup/dmenemen/forcing/era_interim/EIG_*_2* . ln -sf /nobackup/dmenemen/forcing/era_interim_corrected/EIG_dlw_sub5p_2* . cp ../../MITgcm_contrib/llc_hires/llc_1080/input/* . mv data.exch2_90x90x1342 data.exch2 mpiexec -n 1600 ./mitgcmuv ============== look at output for ts=[50760] fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],1080); clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar title(ts) pause(.1) end ts=50760; for fld={'S''T','U','V','W','HEFF'} tmp=quikread_llc([fld{1} '.' myint2str(ts,10) '.data'],1080); clf,quikplot_llc(tmp),thincolorbar title(fld{1}) pause end ============== to determine empty tiles: grep Empty STDOUT.* ============== memory requirements: nPx sNx sNy nSx node0 total rank0 rank1 702 60 60 6 17,642,924kb 770,168,568kb 468 60 60 9 22,083,004kb 643,301,784kb 468 180 180 1 24,719,776kb 720,415,552kb 1678MB 1563MB 351 60 60 12 26,660,020kb 582,815,544kb 351 120 120 3 25,110,324kb 548,819,772kb 1711MB 1586MB 351 120 120 3 6,543,780kb 56,729,484kb - with globalFiles - run out of time 325 54 54 16 29,029,744kb 587,831,344kb 325 216 216 1 29,249,232kb 426,554,484kb - node ran out of memory and crashed 234 90 90 8 30,590,952kb 431,252,200kb - node ran out of memory and crashed 234 180 180 2 27,682,360kb 307,181,152kb - node ran out of memory and crashed ============= factor(3240) = 2 2 2 3 3 3 3 5 factor(1080) = 2 2 2 3 3 3 5 2 = 2 3 = 3 2*2 = 4 5 = 5 2*3 = 6 2*2*2 = 8 3*3 = 9 2*5 = 10 2*2*3 = 12 3*5 = 15 2*3*3 = 18 2*2*5 = 20 2*2*2*3 = 24 3*3*3 = 27 2*3*5 = 30 2*2*3*3 = 36 * 30 2*2*2*5 = 40 * 27 3*3*5 = 45 * 24 2*3*3*3 = 54 * 20 2*2*3*5 = 60 * 18 2*2*2*3*3 = 72 * 15 2*3*3*5 = 90 * 12 2*2*3*3*3 = 108 * 10 2*2*2*3*5 = 120 * 9 3*3*3*5 = 135 * 8 2*2*3*3*5 = 180 * 6 2*2*2*3*3*3 = 216 * 5 2*3*3*3*5 = 270 * 4 2*2*2*3*3*5 = 360 * 3 2*2*3*3*3*5 = 540 * 2