| 1 |
dimitri |
1.1 |
For interactive session, Ivy Bridge nodes: |
| 2 |
dimitri |
1.6 |
qsub -I -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M email |
| 3 |
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qsub -I -q normal -l select=300:ncpus=20:model=ivy,walltime=8:00:00 -m abe -M email |
| 4 |
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qsub -I -q long -l select=300:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M email |
| 5 |
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qsub -I -q long -l select=300:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M email |
| 6 |
dimitri |
1.5 |
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| 7 |
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============== |
| 8 |
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| 9 |
dimitri |
1.10 |
qsub -I -q R3089666 -l select=1750:model=ivy:aoe=sles11,walltime=04:00:00 |
| 10 |
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tcsh |
| 11 |
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cd ~/llc_4320/MITgcm |
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mkdir run |
| 13 |
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lfs setstripe -c -1 run |
| 14 |
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cd run |
| 15 |
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cat $PBS_NODEFILE | awk '{for (i=0;i<20;++i) print $0}' > mynodes |
| 16 |
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setenv PBS_NODEFILE mynodes |
| 17 |
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cp /nobackupp8/chenze/run/mitgcmuv_72x72x29297 . |
| 18 |
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ln -sf /nobackupp8/chenze/run/pickup_seaice_0000000360.meta pickup_seaice.0000000180.meta |
| 19 |
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ln -sf /nobackupp8/chenze/run/pickup_seaice_0000000360.data pickup_seaice.0000000180.data |
| 20 |
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ln -sf /nobackupp8/chenze/run/pickup_0000000360.meta pickup.0000000180.meta |
| 21 |
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ln -sf /nobackupp8/chenze/run/pickup_0000000360.data pickup.0000000180.data |
| 22 |
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ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
| 23 |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
| 24 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
| 25 |
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mv data.exch2_72x72x29297 data.exch2 |
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module purge |
| 27 |
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module load comp-intel/2012.0.032 netcdf/4.0 |
| 28 |
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module use -a ~kjtaylor/modulefiles |
| 29 |
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module load sles11sp3/mpt-2.10-nasa201311271217 |
| 30 |
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setenv MPI_BUFS_PER_PROC 512 |
| 31 |
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setenv MPI_REQUEST_MAX 65536 |
| 32 |
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setenv MPI_GROUP_MAX 1024 |
| 33 |
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setenv MPI_NUM_MEMORY_REGIONS 8 |
| 34 |
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setenv MPI_UNBUFFERED_STDIO 1 |
| 35 |
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setenv MPI_MEMMAP_OFF 1 |
| 36 |
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| 37 |
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mpiexec -n 35000 ./mitgcmuv_72x72x29297 |
| 38 |
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| 39 |
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tail -f STDOUT.00000 | grep advcfl_w |
| 40 |
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| 41 |
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============== |
| 42 |
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| 43 |
dimitri |
1.5 |
cd ~/llc_4320 |
| 44 |
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cvs co MITgcm_code |
| 45 |
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cvs co MITgcm_contrib/llc_hires/llc_4320 |
| 46 |
dimitri |
1.9 |
# set correct tileSizeX and tileSizeY in MITgcm_contrib/llc_hires/llc_4320/cpde-asyn/readtile_mpiio.c |
| 47 |
dimitri |
1.5 |
cd MITgcm |
| 48 |
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module purge |
| 49 |
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module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0 |
| 50 |
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mkdir build run |
| 51 |
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lfs setstripe -c -1 run |
| 52 |
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cd build |
| 53 |
dimitri |
1.3 |
cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_72x72x29297 SIZE.h |
| 54 |
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../tools/genmake2 -of \ |
| 55 |
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../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
| 56 |
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'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
| 57 |
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make depend |
| 58 |
dimitri |
1.8 |
make -j 16 |
| 59 |
dimitri |
1.3 |
cd ../run |
| 60 |
dimitri |
1.9 |
cp ../build/mitgcmuv mitgcmuv_72x72x29297 |
| 61 |
dimitri |
1.3 |
ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
| 62 |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
| 63 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
| 64 |
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mv data.exch2_72x72x29297 data.exch2 |
| 65 |
dimitri |
1.7 |
export MPI_NUM_MEMORY_REGIONS=256 |
| 66 |
dimitri |
1.9 |
mpiexec -n 35000 ./mitgcmuv_72x72x29297 |
| 67 |
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| 68 |
dimitri |
1.10 |
tail -f STDOUT.00000 | grep advcfl_w |
| 69 |
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| 70 |
dimitri |
1.9 |
============== |
| 71 |
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| 72 |
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cd ~/llc_4320 |
| 73 |
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cvs co MITgcm_code |
| 74 |
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cvs co MITgcm_contrib/llc_hires/llc_4320 |
| 75 |
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# set correct tileSizeX and tileSizeY in MITgcm_contrib/llc_hires/llc_4320/cpde-asyn/readtile_mpiio.c |
| 76 |
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cd MITgcm |
| 77 |
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module purge |
| 78 |
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module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0 |
| 79 |
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mkdir build run_180x180x5015 |
| 80 |
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lfs setstripe -c -1 run_180x180x5015 |
| 81 |
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cd build |
| 82 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_180x180x5015 SIZE.h |
| 83 |
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../tools/genmake2 -of \ |
| 84 |
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../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
| 85 |
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'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
| 86 |
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make depend |
| 87 |
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make -j 16 |
| 88 |
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cd ../run_180x180x5015 |
| 89 |
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cp ../build/mitgcmuv mitgcmuv_180x180x5015 |
| 90 |
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ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
| 91 |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
| 92 |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
| 93 |
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mv data.exch2_72x72x29297 data.exch2 |
| 94 |
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export MPI_NUM_MEMORY_REGIONS=256 |
| 95 |
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mpiexec -n 6000 ./mitgcmuv_180x180x5015 |
| 96 |
dimitri |
1.3 |
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| 97 |
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============== |
| 98 |
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| 99 |
dimitri |
1.1 |
look at output |
| 100 |
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| 101 |
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for ts=[0 120 600:10:980 1080:120:2280] |
| 102 |
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fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],4320); |
| 103 |
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clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar |
| 104 |
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title(ts) |
| 105 |
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pause(.1) |
| 106 |
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end |
| 107 |
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| 108 |
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============== |
| 109 |
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| 110 |
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to determine empty tiles: |
| 111 |
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grep Empty STDOUT.* |
| 112 |
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| 113 |
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============= |
| 114 |
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| 115 |
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memory requirements: |
| 116 |
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nPx sNx sNy nSx cpu node0 total |
| 117 |
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3744 180 180 2 san 22,106,128kb 5,195,641,224kb - node ran out of memory and crashed |
| 118 |
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5616 120 120 3 san - node ran out of memory and crashed |
| 119 |
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7488 180 180 1 san |
| 120 |
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| 121 |
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============= |
| 122 |
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| 123 |
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2 = 2 |
| 124 |
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3 = 3 |
| 125 |
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2*2 = 4 |
| 126 |
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5 = 5 |
| 127 |
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2*3 = 6 |
| 128 |
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2*2*2 = 8 |
| 129 |
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3*3 = 9 |
| 130 |
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2*5 = 10 |
| 131 |
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2*2*3 = 12 |
| 132 |
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3*5 = 15 |
| 133 |
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2*2*2*2 = 16 |
| 134 |
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2*3*3 = 18 |
| 135 |
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2*2*5 = 20 |
| 136 |
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2*2*2*3 = 24 |
| 137 |
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3*3*3 = 27 |
| 138 |
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2*3*5 = 30 |
| 139 |
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2*2*2*2*2 = 32 |
| 140 |
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2*2*3*3 = 36 |
| 141 |
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2*2*2*5 = 40 |
| 142 |
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3*3*5 = 45 |
| 143 |
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2*2*2*2*3 = 48 |
| 144 |
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2*3*3*3 = 54 |
| 145 |
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2*2*3*5 = 60 |
| 146 |
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2*2*2*3*3 = 72 * 60 |
| 147 |
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2*2*2*2*5 = 80 * 54 |
| 148 |
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2*3*3*5 = 90 * 48 |
| 149 |
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2*2*2*2*2*3 = 96 * 45 |
| 150 |
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2*2*3*3*3 = 108 * 40 |
| 151 |
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2*2*2*3*5 = 120 * 36 |
| 152 |
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3*3*3*5 = 135 * 32 |
| 153 |
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2*2*2*2*3*3 = 144 * 30 |
| 154 |
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2*2*2*2*2*5 = 160 * 27 |
| 155 |
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2*2*3*3*5 = 180 * 24 |
| 156 |
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2*2*2*3*3*3 = 216 * 20 |
| 157 |
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2*2*2*2*3*5 = 240 * 18 |
| 158 |
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2*3*3*3*5 = 270 * 16 |
| 159 |
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2*2*2*2*2*3*3 = 288 * 15 |
| 160 |
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2*2*2*3*3*5 = 360 * 12 |
| 161 |
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2*2*2*2*3*3*3 = 432 * 10 |
| 162 |
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2*2*2*2*2*3*5 = 480 * 9 |
| 163 |
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2*2*3*3*3*5 = 540 * 8 |
| 164 |
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2*2*2*2*3*3*5 = 720 * 6 |
| 165 |
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2*2*2*2*2*3*3*3 = 864 * 5 |
| 166 |
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2*2*2*3*3*3*5 = 1080 * 4 |
| 167 |
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2*2*2*2*2*3*3*5 = 1440 * 3 |
| 168 |
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2*2*2*2*3*3*3*5 = 2160 * 2 |
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