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dimitri |
1.1 |
For interactive session, Ivy Bridge nodes: |
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qsub -I -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00 |
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qsub -I -q long -l select=300:ncpus=20:model=ivy,walltime=120:00:00 |
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qsub -I -q long -l select=300:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 |
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qsub -I -q normal -l select=300:ncpus=20:model=ivy,walltime=8:00:00 |
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dimitri |
1.3 |
qsub -q ecco -I -W group_list=g26209 -l select=1000:ncpus=20:aoe=sles11,walltime=100:00:00 -m abe -M menemenlis@jpl.nasa.gov |
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dimitri |
1.1 |
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For batch submission: |
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qsub -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00 runscript |
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qsub qsub_llc2160.csh |
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============== |
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| 15 |
dimitri |
1.3 |
cd ~/llc_4320 |
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cvs co MITgcm_code |
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cvs co MITgcm_contrib/llc_hires/llc_4320 |
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cd MITgcm |
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module purge |
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module load comp-intel/11.1.072 mpi-sgi/mpt.2.08r7 netcdf/4.0 |
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mkdir build run |
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lfs setstripe -c -1 run |
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cd build |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_72x72x29297 SIZE.h |
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../tools/genmake2 -of \ |
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../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
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'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
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make depend |
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make -j 8 |
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cd ../run |
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ln -sf ../build/mitgcmuv . |
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ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
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ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
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mv data.exch2_72x72x29297 data.exch2 |
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mpiexec -n 35000 ./mitgcmuv |
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============== |
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| 40 |
dimitri |
1.1 |
cvs co MITgcm_code |
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cd MITgcm |
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module purge |
| 43 |
dimitri |
1.2 |
module load comp-intel/2012.0.032 mpi-sgi/mpt.2.06r6 netcdf/4.0 |
| 44 |
dimitri |
1.1 |
mkdir build run |
| 45 |
dimitri |
1.3 |
lfs setstripe -c -1 run |
| 46 |
dimitri |
1.1 |
cd build |
| 47 |
dimitri |
1.3 |
cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h |
| 48 |
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_180x180x5015 SIZE.h |
| 49 |
dimitri |
1.2 |
../tools/genmake2 -of ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \ |
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'../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async' |
| 51 |
dimitri |
1.1 |
make depend |
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make -j 16 |
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cd ../run |
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ln -sf ../build/mitgcmuv . |
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ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* . |
| 56 |
dimitri |
1.2 |
ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* . |
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cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* . |
| 58 |
dimitri |
1.3 |
mv data.exch2_72x72x29297 data.exch2 |
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mpiexec -n 32000 ./mitgcmuv |
| 60 |
dimitri |
1.1 |
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============== |
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look at output |
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for ts=[0 120 600:10:980 1080:120:2280] |
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fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],4320); |
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clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar |
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title(ts) |
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pause(.1) |
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end |
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============== |
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to determine empty tiles: |
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grep Empty STDOUT.* |
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============= |
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memory requirements: |
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nPx sNx sNy nSx cpu node0 total |
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3744 180 180 2 san 22,106,128kb 5,195,641,224kb - node ran out of memory and crashed |
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5616 120 120 3 san - node ran out of memory and crashed |
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7488 180 180 1 san |
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============= |
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2 = 2 |
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3 = 3 |
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2*2 = 4 |
| 90 |
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5 = 5 |
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2*3 = 6 |
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2*2*2 = 8 |
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3*3 = 9 |
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2*5 = 10 |
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2*2*3 = 12 |
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3*5 = 15 |
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2*2*2*2 = 16 |
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2*3*3 = 18 |
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2*2*5 = 20 |
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2*2*2*3 = 24 |
| 101 |
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3*3*3 = 27 |
| 102 |
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2*3*5 = 30 |
| 103 |
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2*2*2*2*2 = 32 |
| 104 |
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2*2*3*3 = 36 |
| 105 |
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2*2*2*5 = 40 |
| 106 |
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3*3*5 = 45 |
| 107 |
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2*2*2*2*3 = 48 |
| 108 |
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2*3*3*3 = 54 |
| 109 |
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2*2*3*5 = 60 |
| 110 |
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2*2*2*3*3 = 72 * 60 |
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2*2*2*2*5 = 80 * 54 |
| 112 |
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2*3*3*5 = 90 * 48 |
| 113 |
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2*2*2*2*2*3 = 96 * 45 |
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2*2*3*3*3 = 108 * 40 |
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2*2*2*3*5 = 120 * 36 |
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3*3*3*5 = 135 * 32 |
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2*2*2*2*3*3 = 144 * 30 |
| 118 |
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2*2*2*2*2*5 = 160 * 27 |
| 119 |
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2*2*3*3*5 = 180 * 24 |
| 120 |
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2*2*2*3*3*3 = 216 * 20 |
| 121 |
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2*2*2*2*3*5 = 240 * 18 |
| 122 |
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2*3*3*3*5 = 270 * 16 |
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2*2*2*2*2*3*3 = 288 * 15 |
| 124 |
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2*2*2*3*3*5 = 360 * 12 |
| 125 |
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2*2*2*2*3*3*3 = 432 * 10 |
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2*2*2*2*2*3*5 = 480 * 9 |
| 127 |
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2*2*3*3*3*5 = 540 * 8 |
| 128 |
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2*2*2*2*3*3*5 = 720 * 6 |
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2*2*2*2*2*3*3*3 = 864 * 5 |
| 130 |
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2*2*2*3*3*3*5 = 1080 * 4 |
| 131 |
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2*2*2*2*2*3*3*5 = 1440 * 3 |
| 132 |
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2*2*2*2*3*3*3*5 = 2160 * 2 |
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