/[MITgcm]/MITgcm_contrib/llc_hires/llc_4320/readme.txt
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revision 1.11 by dimitri, Thu Jan 16 06:42:00 2014 UTC revision 1.17 by dimitri, Sun May 1 01:35:48 2016 UTC
# Line 1  Line 1 
1  For interactive session, Ivy Bridge nodes:  #############################
2  qsub -I -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M email  # 90x90x19023 configuration
3  qsub -I -q normal -l select=300:ncpus=20:model=ivy,walltime=8:00:00 -m abe -M email  module purge
4  qsub -I -q long -l select=300:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M email  module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0
5  qsub -I -q long -l select=1020:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com  cd ~/llc_4320
6    cvs co MITgcm_code
7    cvs co MITgcm_contrib/llc_hires/llc_4320
8    cd MITgcm
9    mkdir build run485568
10    lfs setstripe -c -1 run_485568
11    cd build
12    rm *
13    cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_90x90x19023 SIZE.h
14    cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .
15    emacs readtile_mpiio.c
16        tileSizeX = 90;
17        tileSizeY = 90;
18    ../tools/genmake2 -of \
19     ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
20     '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'
21    make depend
22    make -j 16
23    cp mitgcmuv ../run_485568/mitgcmuv_90x90x19023_intel.2015.0.090
24    
25    qsub -I -q long -l select=850:ncpus=24:model=has,walltime=120:00:00 -m abe -M menemenlis@me.com
26    qsub -I -q long -l select=1020:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M menemenlis@me.com
27    module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0
28    ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .
29    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
30    cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .
31    cp data.exch2_90x90x19023 data.exch2
32    mv STDOUT.00000 STDOUT.485568
33    emacs data
34     nIter0=485568,
35    ln -sf ../run/pickup_0000485568.data pickup.0000485568.data
36    ln -sf ../run/pickup_0000485568.meta pickup.0000485568.meta
37    ln -sf ../run/pickup_seaice_0000485568.data pickup_seaice.0000485568.data
38    ln -sf ../run/pickup_seaice_0000485568.meta pickup_seaice.0000485568.meta
39    mpiexec -n 20400 ./mitgcmuv_90x90x19023_intel.2015.0.090
40    
41    cd ~/llc_4320/MITgcm/run_485568
42    tail -f STDOUT.00000 | grep advcfl_W
43    
44  #############################  #############################
45  # generate 60x60 blank tiles  # 120x120x10901 configuration
46    module purge
47    module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0
48    cd ~/llc_4320/MITgcm/build
49    cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_120x120x10901 SIZE.h
50    emacs readtile_mpiio.c
51        tileSizeX = 120;
52        tileSizeY = 120;
53    make -j 16
54    cp mitgcmuv ../run_485568/mitgcmuv_120x120x10901_intel.2015.0.090
55    
56    qsub -I -q testing_free -l select=428:ncpus=28:model=bro,walltime=8:00:00 -m abe -M menemenlis@me.com
57    module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0
58    cd ~/llc_4320/MITgcm/run_485568
59    cp data.exch2_120x120x10901 data.exch2
60    mv STDOUT.00000 STDOUT.489024
61    emacs -nw data
62     nIter0=489024,
63    ln -sf pickup_0000489024.data pickup.0000489024.data
64    ln -sf pickup_0000489024.meta pickup.0000489024.meta
65    ln -sf pickup_seaice_0000489024.data pickup_seaice.0000489024.data
66    ln -sf pickup_seaice_0000489024.meta pickup_seaice.0000489024.meta
67    mpiexec -n 11984 ./mitgcmuv_120x120x10901_intel.2015.0.090
68    
69    cd ~/llc_4320/MITgcm/run_485568
70    tail -f STDOUT.00000 | grep advcfl_W
71    
72    
73    #############################
74    # 180x180x5015 configuration
75    module purge
76    module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0
77    cd ~/llc_4320/MITgcm/build
78    cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_180x180x5015 SIZE.h
79    emacs readtile_mpiio.c
80        tileSizeX = 180;
81        tileSizeY = 180;
82    make -j 16
83    cp mitgcmuv ../run_485568/mitgcmuv_180x180x5015_intel.2015.0.090
84    
85    qsub -I -q testing_free -l select=214:ncpus=28:model=bro,walltime=8:00:00 -m abe -M menemenlis@me.com
86    module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0
87    cd ~/llc_4320/MITgcm/run_485568
88    cp data.exch2_180x180x5015 data.exch2
89    mv STDOUT.00000 STDOUT.489024
90    emacs -nw data
91     nIter0=489024,
92    ln -sf pickup_0000489024.data pickup.0000489024.data
93    ln -sf pickup_0000489024.meta pickup.0000489024.meta
94    ln -sf pickup_seaice_0000489024.data pickup_seaice.0000489024.data
95    ln -sf pickup_seaice_0000489024.meta pickup_seaice.0000489024.meta
96    mpiexec -n 5992 ./mitgcmuv_180x180x5015_intel.2015.0.090
97    
98    cd ~/llc_4320/MITgcm/run_485568
99    tail -f STDOUT.00000 | grep advcfl_W
100    
101    
102    #############################
103    # 72x72x29297 configuration
104    module purge
105    module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0
106    cd ~/llc_4320/MITgcm/build
107    cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_72x72x29297 SIZE.h
108    emacs readtile_mpiio.c
109        tileSizeX = 72;
110        tileSizeY = 72;
111    make -j 16
112    cd ~/llc_4320/MITgcm/run_485568
113    cp mitgcmuv ../run_485568/mitgcmuv_72x72x29297_intel.2015.0.090
114    
115    qsub -I -q normal -l select=1333:ncpus=24:model=has,walltime=8:00:00 -m abe -M menemenlis@me.com
116    qsub -I -q normal -l select=1600:ncpus=20:model=ivy,walltime=8:00:00 -m abe -M menemenlis@me.com
117    qsub -I -q wide -l select=1600:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M menemenlis@me.com
118    qsub -I -q ldsd -l select=1600:ncpus=20:model=ivy,walltime=240:00:00 -m abe -M menemenlis@me.com
119    module load comp-intel/2015.0.090 mpi-sgi/mpt.2.12r23 netcdf/4.0
120    cd ~/llc_4320/MITgcm/run_485568
121    cp data.exch2_72x72x29297 data.exch2
122    mv STDOUT.00000 STDOUT.888192
123    emacs -nw data
124     nIter0=888192,
125    ln -sf pickup_0000888192.data pickup.0000888192.data
126    ln -sf pickup_0000888192.meta pickup.0000888192.meta
127    ln -sf pickup_seaice_0000888192.data pickup_seaice.0000888192.data
128    ln -sf pickup_seaice_0000888192.meta pickup_seaice.0000888192.meta
129    mpiexec -n 32000 ./mitgcmuv_72x72x29297_intel.2015.0.090
130    
131    cd ~/llc_4320/MITgcm/run_485568
132    tail -f STDOUT.00000 | grep advcfl_W
133    
134    
135    #############################
136    # 48x48x64670 configuration
137    module purge
138    module load comp-intel/2012.0.032 mpi-sgi/mpt.2.10r6 netcdf/4.0
139    cd ~/llc_4320
140    cvs co MITgcm_code
141    cvs co MITgcm_contrib/llc_hires/llc_4320
142    cd MITgcm
143    mkdir build run
144    lfs setstripe -c -1 run
145    cd build
146    cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_48x48x64670 SIZE.h
147    cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .
148    emacs readtile_mpiio.c
149        tileSizeX = 48;
150        tileSizeY = 48;
151    ../tools/genmake2 -of \
152     ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
153     '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'
154    make depend
155    make -j 16
156    
157    cd ~/llc_4320/MITgcm/run
158    cp ../build/mitgcmuv mitgcmuv_48x48x64670
159    cp ../../MITgcm_contrib/llc_hires/llc_4320/input/data.exch2_90x90x19023 data.exch2
160    
161    
162    #############################
163    # generate 60x60 blank tiles
164  qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com  qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com
165  module purge  module purge
166  module load  comp-intel/2012.0.032 netcdf/4.0  module load  comp-intel/2012.0.032 netcdf/4.0
# Line 15  module load sles11sp3/mpt-2.10-nasa20131 Line 169  module load sles11sp3/mpt-2.10-nasa20131
169  cd ~/llc_4320/MITgcm  cd ~/llc_4320/MITgcm
170  mkdir run_60x60  mkdir run_60x60
171  lfs setstripe -c -1 run_60x60  lfs setstripe -c -1 run_60x60
   
172  cd build  cd build
173  rm *  rm *
174  cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .  cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .
# Line 34  emacs eeboot_minimal.F Line 187  emacs eeboot_minimal.F
187  C         standardMessageUnit=errorMessageUnit  C         standardMessageUnit=errorMessageUnit
188           WRITE(fNam,'(A,A)') 'STDOUT.', myProcessStr(1:5)           WRITE(fNam,'(A,A)') 'STDOUT.', myProcessStr(1:5)
189           OPEN(standardMessageUnit,FILE=fNam,STATUS='unknown')           OPEN(standardMessageUnit,FILE=fNam,STATUS='unknown')
   
190  ../tools/genmake2 -of \  ../tools/genmake2 -of \
191   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
192   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'
193  make depend  make depend
194  make -j 16  make -j 16
   
195  cd ~/llc_4320/MITgcm/run_60x60  cd ~/llc_4320/MITgcm/run_60x60
196  cp ../build/mitgcmuv .  cp ../build/mitgcmuv .
197  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .
198  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
199  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .
200  mv data.exch2_120x120x10901 data.exch2  mv data.exch2_120x120x10901 data.exch2
   
201  emacs data  emacs data
202   tRef =  18.89, 18.89,   tRef =  18.89, 18.89,
203   sRef =  34.84, 34.84,   sRef =  34.84, 34.84,
# Line 58  emacs data Line 208  emacs data
208  # uVelInitFile   ='UVEL_llc2160_10sep2011_4320x56160x90_r4',  # uVelInitFile   ='UVEL_llc2160_10sep2011_4320x56160x90_r4',
209  # vVelInitFile   ='VVEL_llc2160_10sep2011_4320x56160x90_r4',  # vVelInitFile   ='VVEL_llc2160_10sep2011_4320x56160x90_r4',
210  # pSurfInitFile  ='ETAN_llc2160_10sep2011_4320x56160_r4',  # pSurfInitFile  ='ETAN_llc2160_10sep2011_4320x56160_r4',
   
211  emacs data.exch2  emacs data.exch2
212  # remove the blank tile list  # remove the blank tile list
   
213  export MPI_BUFS_PER_PROC=1024  export MPI_BUFS_PER_PROC=1024
214  export MPI_REQUEST_MAX=65536  export MPI_REQUEST_MAX=65536
215  export MPI_GROUP_MAX=1024  export MPI_GROUP_MAX=1024
216  export MPI_NUM_MEMORY_REGIONS=8  export MPI_NUM_MEMORY_REGIONS=8
217  export MPI_UNBUFFERED_STDIO=1  export MPI_UNBUFFERED_STDIO=1
218  export MPI_MEMMAP_OFF=1  export MPI_MEMMAP_OFF=1
219    export MPI_UD_TIMEOUT=100
220  mpiexec -n 12000 ./mitgcmuv  mpiexec -n 12000 ./mitgcmuv
221    
222    
223  #############################  #############################
224  # generate 45x45 blank tiles  # generate 45x45 blank tiles
   
225  qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com  qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com
226  module purge  module purge
227  module load  comp-intel/2012.0.032 netcdf/4.0  module load  comp-intel/2012.0.032 netcdf/4.0
# Line 81  module load sles11sp3/mpt-2.10-nasa20131 Line 230  module load sles11sp3/mpt-2.10-nasa20131
230  cd ~/llc_4320/MITgcm  cd ~/llc_4320/MITgcm
231  mkdir run_45x45  mkdir run_45x45
232  lfs setstripe -c -1 run_45x45  lfs setstripe -c -1 run_45x45
   
233  cd build  cd build
234  rm *  rm *
235  cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .  cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .
# Line 100  emacs eeboot_minimal.F Line 248  emacs eeboot_minimal.F
248  C         standardMessageUnit=errorMessageUnit  C         standardMessageUnit=errorMessageUnit
249           WRITE(fNam,'(A,A)') 'STDOUT.', myProcessStr(1:5)           WRITE(fNam,'(A,A)') 'STDOUT.', myProcessStr(1:5)
250           OPEN(standardMessageUnit,FILE=fNam,STATUS='unknown')           OPEN(standardMessageUnit,FILE=fNam,STATUS='unknown')
   
251  ../tools/genmake2 -of \  ../tools/genmake2 -of \
252   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
253   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'
254  make depend  make depend
255  make -j 16  make -j 16
   
256  cd ~/llc_4320/MITgcm/run_45x45  cd ~/llc_4320/MITgcm/run_45x45
257  cp ../build/mitgcmuv .  cp ../build/mitgcmuv .
258  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .
259  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
260  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .
261  mv data.exch2_120x120x10901 data.exch2  mv data.exch2_120x120x10901 data.exch2
   
262  emacs data  emacs data
263   tRef =  18.89, 18.89,   tRef =  18.89, 18.89,
264   sRef =  34.84, 34.84,   sRef =  34.84, 34.84,
# Line 124  emacs data Line 269  emacs data
269  # uVelInitFile   ='UVEL_llc2160_10sep2011_4320x56160x90_r4',  # uVelInitFile   ='UVEL_llc2160_10sep2011_4320x56160x90_r4',
270  # vVelInitFile   ='VVEL_llc2160_10sep2011_4320x56160x90_r4',  # vVelInitFile   ='VVEL_llc2160_10sep2011_4320x56160x90_r4',
271  # pSurfInitFile  ='ETAN_llc2160_10sep2011_4320x56160_r4',  # pSurfInitFile  ='ETAN_llc2160_10sep2011_4320x56160_r4',
   
272  emacs data.exch2  emacs data.exch2
273  # remove the blank tile list  # remove the blank tile list
   
274  export MPI_BUFS_PER_PROC=1024  export MPI_BUFS_PER_PROC=1024
275  export MPI_REQUEST_MAX=65536  export MPI_REQUEST_MAX=65536
276  export MPI_GROUP_MAX=1024  export MPI_GROUP_MAX=1024
277  export MPI_NUM_MEMORY_REGIONS=8  export MPI_NUM_MEMORY_REGIONS=8
278  export MPI_UNBUFFERED_STDIO=1  export MPI_UNBUFFERED_STDIO=1
279  export MPI_MEMMAP_OFF=1  export MPI_MEMMAP_OFF=1
280    export MPI_UD_TIMEOUT=100
281  mpiexec -n 12000 ./mitgcmuv  mpiexec -n 12000 ./mitgcmuv
282    
283    
284  #############################  #############################
285  # 120x120x10901 configuration  # generate 48x48 blank tiles
286    qsub -I -q devel -l select=600:ncpus=20:model=ivy,walltime=2:00:00 -m abe -M menemenlis@me.com
 qsub -I -q long -l select=600:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M menemenlis@me.com  
287  module purge  module purge
288  module load  comp-intel/2012.0.032 netcdf/4.0  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.10r6 netcdf/4.0
289  module use -a ~kjtaylor/modulefiles  cd ~/llc_4320/MITgcm
290  module load sles11sp3/mpt-2.10-nasa201311271217  mkdir run_48x48
291  cd ~/llc_4320  lfs setstripe -c -1 run_48x48
 cvs co MITgcm_code  
 cvs co MITgcm_contrib/llc_hires/llc_4320  
 cd MITgcm  
 mkdir build run  
 lfs setstripe -c -1 run  
292  cd build  cd build
293  cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_120x120x10901 SIZE.h  rm *
294  cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .  cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/readtile_mpiio.c .
295  emacs readtile_mpiio.c  emacs readtile_mpiio.c
296      tileSizeX = 120;      tileSizeX = 48;
297      tileSizeY = 120;      tileSizeY = 48;
298    cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_120x120x10901 SIZE.h
299    emacs SIZE.h
300         &           sNx =  48,
301         &           sNy =  48,
302         &           nSx =  10,
303         &           nPx = 10530,
304         &           Nr  =  2 )
305    cp ../../MITgcm_contrib/llc_hires/llc_4320/code-async/eeboot_minimal.F .
306    emacs eeboot_minimal.F
307    C         standardMessageUnit=errorMessageUnit
308             WRITE(fNam,'(A,A)') 'STDOUT.', myProcessStr(1:5)
309             OPEN(standardMessageUnit,FILE=fNam,STATUS='unknown')
310  ../tools/genmake2 -of \  ../tools/genmake2 -of \
311   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
312   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'
313  make depend  make depend
314  make -j 16  make -j 16
315    cd ~/llc_4320/MITgcm/run_48x48
316  cd ~/llc_4320/MITgcm/run  cp ../build/mitgcmuv .
 cp ../build/mitgcmuv mitgcmuv_120x120x10901  
317  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .
318  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
319  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .
320  mv data.exch2_120x120x10901 data.exch2  mv data.exch2_120x120x10901 data.exch2
321    emacs data.exch2
322    # remove blankList
323  emacs data  emacs data
324     tRef =  18.89, 18.89,
325     sRef =  34.84, 34.84,
326     endtime=20.,
327     delR =   1.00,    1.14,
328    # hydrogThetaFile='THETA_llc2160_10sep2011_4320x56160x90_r4',
329    # hydrogSaltFile ='SALT_llc2160_10sep2011_4320x56160x90_r4',
330    # uVelInitFile   ='UVEL_llc2160_10sep2011_4320x56160x90_r4',
331    # vVelInitFile   ='VVEL_llc2160_10sep2011_4320x56160x90_r4',
332    # pSurfInitFile  ='ETAN_llc2160_10sep2011_4320x56160_r4',
333  export MPI_BUFS_PER_PROC=1024  export MPI_BUFS_PER_PROC=1024
334  export MPI_REQUEST_MAX=65536  export MPI_REQUEST_MAX=65536
335  export MPI_GROUP_MAX=1024  export MPI_GROUP_MAX=1024
336  export MPI_NUM_MEMORY_REGIONS=8  export MPI_NUM_MEMORY_REGIONS=8
337  export MPI_UNBUFFERED_STDIO=1  export MPI_UNBUFFERED_STDIO=1
338  export MPI_MEMMAP_OFF=1  export MPI_MEMMAP_OFF=1
339  mpiexec -n 12000 ./mitgcmuv_120x120x10901  export MPI_UD_TIMEOUT=100
340    mpiexec -n 12000 ./mitgcmuv
 tail -f STDOUT.00000 | grep advcfl_W  
341    
 ==============  
342    
343    #############################
344  qsub -I -q R3089666 -l select=1750:model=ivy:aoe=sles11,walltime=04:00:00  qsub -I -q R3089666 -l select=1750:model=ivy:aoe=sles11,walltime=04:00:00
345  tcsh  tcsh
346  cd ~/llc_4320/MITgcm  cd ~/llc_4320/MITgcm
# Line 210  setenv MPI_GROUP_MAX 1024 Line 368  setenv MPI_GROUP_MAX 1024
368  setenv MPI_NUM_MEMORY_REGIONS 8  setenv MPI_NUM_MEMORY_REGIONS 8
369  setenv MPI_UNBUFFERED_STDIO 1  setenv MPI_UNBUFFERED_STDIO 1
370  setenv MPI_MEMMAP_OFF 1  setenv MPI_MEMMAP_OFF 1
371    export MPI_UD_TIMEOUT=100
372    
373  mpiexec -n 35000 ./mitgcmuv_72x72x29297  mpiexec -n 35000 ./mitgcmuv_72x72x29297
374    
375  tail -f STDOUT.00000 | grep advcfl_w  tail -f STDOUT.00000 | grep advcfl_w
376    
 ==============  
377    
378    #############################
379  cd ~/llc_4320  cd ~/llc_4320
380  cvs co MITgcm_code  cvs co MITgcm_code
381  cvs co MITgcm_contrib/llc_hires/llc_4320  cvs co MITgcm_contrib/llc_hires/llc_4320
# Line 244  mpiexec -n 35000 ./mitgcmuv_72x72x29297 Line 403  mpiexec -n 35000 ./mitgcmuv_72x72x29297
403    
404  tail -f STDOUT.00000 | grep advcfl_w  tail -f STDOUT.00000 | grep advcfl_w
405    
 ==============  
406    
407    #############################
408  cd ~/llc_4320  cd ~/llc_4320
409  cvs co MITgcm_code  cvs co MITgcm_code
410  cvs co MITgcm_contrib/llc_hires/llc_4320  cvs co MITgcm_contrib/llc_hires/llc_4320
# Line 271  mv data.exch2_72x72x29297 data.exch2 Line 430  mv data.exch2_72x72x29297 data.exch2
430  export MPI_NUM_MEMORY_REGIONS=256  export MPI_NUM_MEMORY_REGIONS=256
431  mpiexec -n 6000 ./mitgcmuv_180x180x5015  mpiexec -n 6000 ./mitgcmuv_180x180x5015
432    
 ==============  
   
 look at output  
433    
434    #############################
435    # look at output
436  for ts=[0 120 600:10:980 1080:120:2280]  for ts=[0 120 600:10:980 1080:120:2280]
437      fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],4320);      fld=quikread_llc(['Eta.' myint2str(ts,10) '.data'],4320);
438      clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar      clf,quikplot_llc(fld),caxis([-2.5 2]),thincolorbar
# Line 282  for ts=[0 120 600:10:980 1080:120:2280] Line 440  for ts=[0 120 600:10:980 1080:120:2280]
440      pause(.1)      pause(.1)
441  end  end
442    
 ==============  
443    
444  to determine empty tiles:  #############################
445    # to determine empty tiles:
446  grep Empty STDOUT.*  grep Empty STDOUT.*
447    
 =============  
448    
449  memory requirements:  #############################
450  nPx  sNx sNy nSx cpu node0        total  # memory requirements:
451  3744 180 180   2 san 22,106,128kb 5,195,641,224kb - node ran out of memory and crashed  # nPx  sNx sNy nSx cpu node0        total
452  5616 120 120   3 san - node ran out of memory and crashed  # 3744 180 180   2 san 22,106,128kb 5,195,641,224kb - node ran out of memory and crashed
453  7488 180 180   1 san  # 5616 120 120   3 san - node ran out of memory and crashed
454    # 7488 180 180   1 san
455    
 =============  
456    
457    #############################
458  2               =    2  2               =    2
459  3               =    3  3               =    3
460  2*2             =    4  2*2             =    4
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