/[MITgcm]/MITgcm_contrib/llc_hires/llc_4320/readme.txt
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revision 1.5 by dimitri, Fri Nov 1 16:51:49 2013 UTC revision 1.9 by dimitri, Fri Jan 10 20:52:36 2014 UTC
# Line 1  Line 1 
1  For interactive session, Ivy Bridge nodes:  For interactive session, Ivy Bridge nodes:
2  qsub -I -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00  qsub -I -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00 -m abe -M email
3  qsub -I -q long -l select=300:ncpus=20:model=ivy,walltime=120:00:00  qsub -I -q normal -l select=300:ncpus=20:model=ivy,walltime=8:00:00 -m abe -M email
4  qsub -I -q long -l select=300:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00  qsub -I -q long -l select=300:ncpus=20:model=ivy,walltime=120:00:00 -m abe -M email
5  qsub -I -q normal -l select=300:ncpus=20:model=ivy,walltime=8:00:00  qsub -I -q long -l select=300:ncpus=20:model=ivy,min_walltime=30:00,max_walltime=120:00:00 -m abe -M email
 qsub -q ecco -I -W group_list=g26209 -l select=1000:ncpus=20:aoe=sles11,walltime=100:00:00 -m abe -M menemenlis@jpl.nasa.gov  
   
   
 For batch submission:  
 qsub -q devel -l select=300:ncpus=20:model=ivy,walltime=02:00:00 runscript  
 qsub qsub_llc2160.csh  
6    
7  ==============  ==============
8    
9  cd ~/llc_4320  cd ~/llc_4320
10  cvs co MITgcm_code  cvs co MITgcm_code
11  cvs co MITgcm_contrib/llc_hires/llc_4320  cvs co MITgcm_contrib/llc_hires/llc_4320
12    # set correct tileSizeX and tileSizeY in MITgcm_contrib/llc_hires/llc_4320/cpde-asyn/readtile_mpiio.c
13  cd MITgcm  cd MITgcm
14  module purge  module purge
15  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0
16  mkdir build run  mkdir build run
17  lfs setstripe -c -1 run  lfs setstripe -c -1 run
18  cd build  cd build
19  cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_90x90x19023 SIZE.h  cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_72x72x29297 SIZE.h
20  ../tools/genmake2 -of \  ../tools/genmake2 -of \
21   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
22   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'
23  make depend  make depend
24  make -j 8  make -j 16
25  cd ../run  cd ../run
26  ln -sf ../build/mitgcmuv .  cp ../build/mitgcmuv mitgcmuv_72x72x29297
27  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .
28  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
29  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .
30  mv data.exch2_90x90x19023 data.exch2  mv data.exch2_72x72x29297 data.exch2
31  ln -sf pickup_llc1080_14jan2011_4320x56160x543_r4 pickup.0000060480.data  export MPI_NUM_MEMORY_REGIONS=256
32  ln -sf pickup_seaice_llc1080_14jan2011_4320x56160x543_r4 pickup_seaice.0000060480.data  mpiexec -n 35000 ./mitgcmuv_72x72x29297
 mpiexec -n 35000 ./mitgcmuv  
33    
34  ==============  ==============
35    
36  cd ~/llc_4320  cd ~/llc_4320
37  cvs co MITgcm_code  cvs co MITgcm_code
38  cvs co MITgcm_contrib/llc_hires/llc_4320  cvs co MITgcm_contrib/llc_hires/llc_4320
39    # set correct tileSizeX and tileSizeY in MITgcm_contrib/llc_hires/llc_4320/cpde-asyn/readtile_mpiio.c
40  cd MITgcm  cd MITgcm
41  module purge  module purge
42  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0
43  mkdir build run  mkdir build run_180x180x5015
44  lfs setstripe -c -1 run  lfs setstripe -c -1 run_180x180x5015
45  cd build  cd build
46  cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_72x72x29297 SIZE.h  cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_180x180x5015 SIZE.h
47  ../tools/genmake2 -of \  ../tools/genmake2 -of \
48   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
49   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'
50  make depend  make depend
 make -j 8  
 cd ../run  
 ln -sf ../build/mitgcmuv .  
 ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .  
 ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  
 cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .  
 mv data.exch2_72x72x29297 data.exch2  
 mpiexec -n 35000 ./mitgcmuv  
   
 ==============  
   
 cvs co MITgcm_code  
 cd MITgcm  
 module purge  
 module load comp-intel/2012.0.032 mpi-sgi/mpt.2.06r6 netcdf/4.0  
 mkdir build run  
 lfs setstripe -c -1 run  
 cd build  
 cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h  
 _180x180x5015 SIZE.h  
 ../tools/genmake2 -of ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \  
  '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'  
 make depend  
51  make -j 16  make -j 16
52  cd ../run  cd ../run_180x180x5015
53  ln -sf ../build/mitgcmuv .  cp ../build/mitgcmuv mitgcmuv_180x180x5015
54  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .
55  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
56  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .
57  mv data.exch2_72x72x29297 data.exch2  mv data.exch2_72x72x29297 data.exch2
58  mpiexec -n 32000 ./mitgcmuv  export MPI_NUM_MEMORY_REGIONS=256
59    mpiexec -n 6000 ./mitgcmuv_180x180x5015
60    
61  ==============  ==============
62    
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