/[MITgcm]/MITgcm_contrib/llc_hires/llc_90/readme.txt
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revision 1.2 by dimitri, Tue Oct 3 02:33:26 2017 UTC revision 1.12 by dimitri, Fri Feb 7 15:39:15 2020 UTC
# Line 1  Line 1 
1  # This is a small test case with set-up as similar as possible  # This is a small test case with set-up as similar as possible
2  # to llc_4320 for testing asyncio and coupling to GEOS-5.  # to llc_4320 for testing asyncio and coupling to GEOS-5.
3    
4  # request interactive nodes  # Get MITgcm from GitHub
5  qsub -I -q long -l select=6:ncpus=28:model=bro,walltime=120:00:00  #- method 1, using https:
6     git clone https://github.com/MITgcm/MITgcm.git
7    #- method 2, using ssh (requires a github account):
8     git clone git@github.com:MITgcm/MITgcm.git
9    
10  #################################################  # Get MITgcm_contrib from CVS
11  # 30x30x96 configuration no asyncio checkpoint65v  cvs co MITgcm_contrib/llc_hires/llc_90
12    
13    # request interactive nodes and load modules
14    qsub -I -q long -l select=5:ncpus=28:model=bro,walltime=120:00:00
15  module purge  module purge
16  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
17  cd ~/geos5/asyncio  
18  cvs co -r checkpoint65v MITgcm_code  ########################################
19  cvs co MITgcm_contrib/llc_hires/llc_90  # 30x30x96 configuration without asyncio
20  cd MITgcm  cd MITgcm
21  mkdir build run1  mkdir build run1
22  cd build  cd build
23  rm *  rm *
24  ../tools/genmake2 -of \  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
  ../../MITgcm_contrib/llc_hires/llc_90/code/linux_amd64_ifort+mpi_ice_nas \  
25   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code
26  make depend  make depend
27  make -j 96  make -j 96
 cp mitgcmuv ../run1  
28  cd ../run1  cd ../run1
29  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  cp ../build/mitgcmuv .
30    ln -sf /nobackup/dmenemen/tarballs/llc_90/* .
31  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
32  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
33  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
34  mpiexec -n 96 ./mitgcmuv  mpiexec -n 96 ./mitgcmuv
35    
36  ###################################################  ###################################################
37  # 30x30x96 configuration with asyncio checkpoint65v  # 30x30x96 configuration with Bron's latest asyncio
38  cd ~/geos5/asyncio/MITgcm  cd ../../MITgcm
39  mkdir run2  mkdir run2
40  cd build  cd build
41  rm *  rm *
42  ../tools/genmake2 -of \  ../tools/genmake2 -of \
43   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
44   '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'   '../../MITgcm_contrib/llc_hires/llc_90/code-async ../../MITgcm_contrib/llc_hires/llc_90/code'
45  make depend  make depend
46  make -j 96  make -j 96
 cp mitgcmuv ../run2  
47  cd ../run2  cd ../run2
48  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  cp ../build/mitgcmuv .
49    ln -sf /nobackup/dmenemen/tarballs/llc_90/* .
50  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
51  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
52  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
53  mpiexec -n 124 ./mitgcmuv  mv data_async data
54    mpiexec -n 136 ./mitgcmuv
55    
56  ############################################  #################################################################
57  # 30x30x96 configuration with asyncio latest  # 30x30x96 configuration with Bron's latest asyncio and no seaice
58  cd ~/geos5/asyncio/MITgcm  cd ../../MITgcm
59  mkdir run2  mkdir run3
60  cd build  cd build
61  rm *  rm *
62  ../tools/genmake2 -of \  ../tools/genmake2 -of \
63   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas \
64   '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'    -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code-async-noseaice
65  make depend  make depend
66  make -j 96  make -j 96
67  cp mitgcmuv ../run2  cd ../run3
68  cd ../run2  cp ../build/mitgcmuv .
69  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  ln -sf /nobackup/dmenemen/tarballs/llc_90/* .
70  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
71  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
72  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input-noseaice/* .
73  mpiexec -n 124 ./mitgcmuv  mpiexec -n 136 ./mitgcmuv
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