/[MITgcm]/MITgcm_contrib/llc_hires/llc_90/readme.txt
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revision 1.6 by dimitri, Fri Oct 19 22:54:15 2018 UTC revision 1.12 by dimitri, Fri Feb 7 15:39:15 2020 UTC
# Line 1  Line 1 
1  # This is a small test case with set-up as similar as possible  # This is a small test case with set-up as similar as possible
2  # to llc_4320 for testing asyncio and coupling to GEOS-5.  # to llc_4320 for testing asyncio and coupling to GEOS-5.
3    
4    # Get MITgcm from GitHub
5    #- method 1, using https:
6     git clone https://github.com/MITgcm/MITgcm.git
7    #- method 2, using ssh (requires a github account):
8     git clone git@github.com:MITgcm/MITgcm.git
9    
10    # Get MITgcm_contrib from CVS
11    cvs co MITgcm_contrib/llc_hires/llc_90
12    
13  # request interactive nodes and load modules  # request interactive nodes and load modules
14  qsub -I -q long -l select=6:ncpus=28:model=bro,walltime=120:00:00  qsub -I -q long -l select=5:ncpus=28:model=bro,walltime=120:00:00
15  module purge  module purge
16  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
17    
18  ########################################  ########################################
19  # 30x30x96 configuration without asyncio  # 30x30x96 configuration without asyncio
 cvs co MITgcm_code  
 cvs co MITgcm_contrib/llc_hires/llc_90  
20  cd MITgcm  cd MITgcm
21  mkdir build run1  mkdir build run1
22  cd build  cd build
# Line 17  rm * Line 24  rm *
24  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
25   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code
26  make depend  make depend
27  make -j 16  make -j 96
 cp mitgcmuv ../run1  
28  cd ../run1  cd ../run1
29  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  cp ../build/mitgcmuv .
30    ln -sf /nobackup/dmenemen/tarballs/llc_90/* .
31  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
32  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
33  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
34  mpiexec -n 96 ./mitgcmuv  mpiexec -n 96 ./mitgcmuv
35    
36  #####################################  ###################################################
37  # 30x30x96 configuration with asyncio  # 30x30x96 configuration with Bron's latest asyncio
38  cd ../../MITgcm  cd ../../MITgcm
39  mkdir run2  mkdir run2
40  cd build  cd build
41  rm *  rm *
42  ../tools/genmake2 -of \  ../tools/genmake2 -of \
43   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
44   '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'   '../../MITgcm_contrib/llc_hires/llc_90/code-async ../../MITgcm_contrib/llc_hires/llc_90/code'
45  make depend  make depend
46  make -j 16  make -j 96
 cp mitgcmuv ../run2  
47  cd ../run2  cd ../run2
48  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  cp ../build/mitgcmuv .
49    ln -sf /nobackup/dmenemen/tarballs/llc_90/* .
50  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
51  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
52  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
53  mv data_async data  mv data_async data
54  mpiexec -n 124 ./mitgcmuv  mpiexec -n 136 ./mitgcmuv
55    
56  ###################################################  #################################################################
57  # 30x30x96 configuration with asyncio and no seaice  # 30x30x96 configuration with Bron's latest asyncio and no seaice
58    cd ../../MITgcm
59  mkdir run3  mkdir run3
60  cd build  cd build
61  rm *  rm *
# Line 55  rm * Line 63  rm *
63   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas \   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas \
64    -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code-async-noseaice    -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code-async-noseaice
65  make depend  make depend
66  make -j 16  make -j 96
 cp mitgcmuv ../run3  
67  cd ../run3  cd ../run3
68  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  cp ../build/mitgcmuv .
69    ln -sf /nobackup/dmenemen/tarballs/llc_90/* .
70  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
71  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
72  cp ../../MITgcm_contrib/llc_hires/llc_90/input-noseaice/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input-noseaice/* .
73  mpiexec -n 124 ./mitgcmuv  mpiexec -n 136 ./mitgcmuv
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