/[MITgcm]/MITgcm_contrib/llc_hires/llc_90/readme.txt
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revision 1.2 by dimitri, Tue Oct 3 02:33:26 2017 UTC revision 1.6 by dimitri, Fri Oct 19 22:54:15 2018 UTC
# Line 1  Line 1 
1  # This is a small test case with set-up as similar as possible  # This is a small test case with set-up as similar as possible
2  # to llc_4320 for testing asyncio and coupling to GEOS-5.  # to llc_4320 for testing asyncio and coupling to GEOS-5.
3    
4  # request interactive nodes  # request interactive nodes and load modules
5  qsub -I -q long -l select=6:ncpus=28:model=bro,walltime=120:00:00  qsub -I -q long -l select=6:ncpus=28:model=bro,walltime=120:00:00
   
 #################################################  
 # 30x30x96 configuration no asyncio checkpoint65v  
6  module purge  module purge
7  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
8  cd ~/geos5/asyncio  
9  cvs co -r checkpoint65v MITgcm_code  ########################################
10    # 30x30x96 configuration without asyncio
11    cvs co MITgcm_code
12  cvs co MITgcm_contrib/llc_hires/llc_90  cvs co MITgcm_contrib/llc_hires/llc_90
13  cd MITgcm  cd MITgcm
14  mkdir build run1  mkdir build run1
15  cd build  cd build
16  rm *  rm *
17  ../tools/genmake2 -of \  ../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas \
  ../../MITgcm_contrib/llc_hires/llc_90/code/linux_amd64_ifort+mpi_ice_nas \  
18   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code   -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code
19  make depend  make depend
20  make -j 96  make -j 16
21  cp mitgcmuv ../run1  cp mitgcmuv ../run1
22  cd ../run1  cd ../run1
23  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
# Line 28  ln -sf /nobackupp2/dmenemen//llc_4320/ru Line 26  ln -sf /nobackupp2/dmenemen//llc_4320/ru
26  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
27  mpiexec -n 96 ./mitgcmuv  mpiexec -n 96 ./mitgcmuv
28    
29  ###################################################  #####################################
30  # 30x30x96 configuration with asyncio checkpoint65v  # 30x30x96 configuration with asyncio
31  cd ~/geos5/asyncio/MITgcm  cd ../../MITgcm
32  mkdir run2  mkdir run2
33  cd build  cd build
34  rm *  rm *
# Line 38  rm * Line 36  rm *
36   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
37   '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'   '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'
38  make depend  make depend
39  make -j 96  make -j 16
40  cp mitgcmuv ../run2  cp mitgcmuv ../run2
41  cd ../run2  cd ../run2
42  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
43  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
44  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
45  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
46    mv data_async data
47  mpiexec -n 124 ./mitgcmuv  mpiexec -n 124 ./mitgcmuv
48    
49  ############################################  ###################################################
50  # 30x30x96 configuration with asyncio latest  # 30x30x96 configuration with asyncio and no seaice
51  cd ~/geos5/asyncio/MITgcm  mkdir run3
 mkdir run2  
52  cd build  cd build
53  rm *  rm *
54  ../tools/genmake2 -of \  ../tools/genmake2 -of \
55   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas \
56   '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'    -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code-async-noseaice
57  make depend  make depend
58  make -j 96  make -j 16
59  cp mitgcmuv ../run2  cp mitgcmuv ../run3
60  cd ../run2  cd ../run3
61  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .
62  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
63  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
64  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input-noseaice/* .
65  mpiexec -n 124 ./mitgcmuv  mpiexec -n 124 ./mitgcmuv
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