/[MITgcm]/MITgcm_contrib/llc_hires/llc_90/readme.txt
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revision 1.3 by dimitri, Tue Oct 3 04:20:38 2017 UTC revision 1.9 by dimitri, Tue Feb 4 22:13:44 2020 UTC
# Line 1  Line 1 
1  # This is a small test case with set-up as similar as possible  # This is a small test case with set-up as similar as possible
2  # to llc_4320 for testing asyncio and coupling to GEOS-5.  # to llc_4320 for testing asyncio and coupling to GEOS-5.
3    
4    # Get MITgcm from GitHub
5    #- method 1, using https:
6     git clone https://github.com/MITgcm/MITgcm.git
7    #- method 2, using ssh (requires a github account):
8     git clone git@github.com:MITgcm/MITgcm.git
9    
10    # Get MITgcm_contrib from CVS
11    cvs co MITgcm_contrib/llc_hires/llc_90
12    
13  # request interactive nodes and load modules  # request interactive nodes and load modules
14  qsub -I -q long -l select=6:ncpus=28:model=bro,walltime=120:00:00  qsub -I -q long -l select=5:ncpus=28:model=bro,walltime=120:00:00
15  module purge  module purge
16  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt  module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
17    
18  ########################################  ########################################
19  # 30x30x96 configuration without asyncio  # 30x30x96 configuration without asyncio
 cd ~/geos5/asyncio  
 cvs co MITgcm_code  
 cvs co MITgcm_contrib/llc_hires/llc_90  
20  cd MITgcm  cd MITgcm
21  mkdir build run1  mkdir build run1
22  cd build  cd build
# Line 21  make depend Line 27  make depend
27  make -j 96  make -j 96
28  cp mitgcmuv ../run1  cp mitgcmuv ../run1
29  cd ../run1  cd ../run1
30  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  ln -sf /nobackup/dmenemen/tarballs/llc_90/* .
31  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
32  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
33  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
# Line 29  mpiexec -n 96 ./mitgcmuv Line 35  mpiexec -n 96 ./mitgcmuv
35    
36  #####################################  #####################################
37  # 30x30x96 configuration with asyncio  # 30x30x96 configuration with asyncio
38  cd ~/geos5/asyncio/MITgcm  cd ../../MITgcm
39  mkdir run2  mkdir run2
40  cd build  cd build
41  rm *  rm *
42  ../tools/genmake2 -of \  ../tools/genmake2 -of \
43   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
44   '../../MITgcm_contrib/llc_hires/llc_90/code ../../MITgcm_contrib/llc_hires/llc_90/code-async'   '../../MITgcm_contrib/llc_hires/llc_90/code-async ../../MITgcm_contrib/llc_hires/llc_90/code'
45  make depend  make depend
46  make -j 96  make -j 96
47  cp mitgcmuv ../run2  cp mitgcmuv ../run2
48  cd ../run2  cd ../run2
49  ln -sf /nobackup/dmenemen/GEOS5/experiments/llc90/data/* .  ln -sf /nobackup/dmenemen/tarballs/llc_90/* .
50  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
51  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .  ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
52  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_90/input/* .
53    mv data_async data
54    mpiexec -n 136 ./mitgcmuv
55    
56    ###################################################
57    # 30x30x96 configuration with asyncio and no seaice
58    cd ../../MITgcm
59    mkdir run4
60    cd build
61    rm *
62    ../tools/genmake2 -of \
63     ../../MITgcm_contrib/llc_hires/llc_90/code-async/linux_amd64_ifort+mpi_ice_nas \
64      -mpi -mods ../../MITgcm_contrib/llc_hires/llc_90/code-async-noseaice
65    make depend
66    make -j 16
67    cp mitgcmuv ../run4
68    cd ../run4
69    ln -sf /nobackup/dmenemen/tarballs/llc_90/* .
70    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
71    ln -sf /nobackupp2/dmenemen//llc_4320/run_template/runoff1p2472-360x180x12.bin .
72    cp ../../MITgcm_contrib/llc_hires/llc_90/input-noseaice/* .
73  mpiexec -n 124 ./mitgcmuv  mpiexec -n 124 ./mitgcmuv
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