#
# Files in the natl_12 configuration
#
./build/README          :: Some notes on how to compile

./build/genmake         :: Customized genmake with optimization flags etc..
                        :: for ifc compiler on the MITgcm cluster.

./README                :: General information 

./code/CPP_EEOPTIONS.h  :: Custom CPP flags

./code/CPP_OPTIONS.h    :: Custim CPP flags

./code/FFIELDS.h        :: Added forcing array for north and south boundary 
                        :: conditions, which can be open boundaries or sponge.

./code/GMREDI_OPTIONS.h :: Custom CPP flags (probably not needed)

./code/README           :: More information on contents of code/

./code/SIZE.h           :: Sets domain extent

./code/external_forcing.F  :: Extra code for sponge layer added
 
./code/gad_biharm_x.F      :: Scale factors for stretched grid in X and Y added

./code/gad_biharm_y.F      :: Scale factors for stretched grid in X and Y added

./code/gad_diff_x.F        :: Scale factors for stretched grid in X and Y added

./code/gad_diff_y.F        :: Scale factors for stretched grid in X and Y added

./code/ini_depths.F        :: Custom code to tweak bathymetry not needed 
                           :: in production run

./code/ini_fields.F        :: Changes to read in sponge layer T and S profile
                           :: during pickup

./code/ini_salt.F          :: Added code to store initial hydrography in
                           :: forcing array for use in sponge layer.

./code/ini_theta.F         :: Added code to store initial hydrography in
                           :: forcing array for use in sponge layer.
./code/mom_u_sidedrag.F    :: Scale factors for stretched grid in X and Y added
./code/mom_u_xviscflux.F   :: Scale factors for stretched grid in X and Y added
./code/mom_u_yviscflux.F   :: Scale factors for stretched grid in X and Y added
./code/mom_v_sidedrag.F    :: Scale factors for stretched grid in X and Y added
./code/mom_v_xviscflux.F   :: Scale factors for stretched grid in X and Y added
./code/mom_v_yviscflux.F   :: Scale factors for stretched grid in X and Y added
./code/mom_vi_hdissip.F    :: Scale factors for stretched grid in X and Y added
./code/mom_vi_u_xviscflux.F  :: Scale factors for stretched grid in X and Y added
./code/mom_vi_u_yviscflux.F  :: Scale factors for stretched grid in X and Y added
./code/mom_vi_v_xviscflux.F  :: Scale factors for stretched grid in X and Y added
./code/mom_vi_v_yviscflux.F  :: Scale factors for stretched grid in X and Y added
./code/mon_advcfl.F        :: Extra diagnostic for index of CFL maximum added

./code/set_defaults.F      ::

./inputs/POLY3.COEFFS      :: Polynomial equation of state factors for 23 layers

./inputs/README            :: Description of input datasets

./inputs/data              :: Parameters for this configuration
./inputs/data.pkg
./inputs/eedata
./inputs/levitusSaltClim.bin  :: Initial hydrography, from Levitus but mapped
                              :: to 1/12 degree 

./inputs/levitusThetaClim.bin :: Initial hydrography, from Levitus but mapped
                              :: to 1/12 degree 

./inputs/tauxClim.bin         :: Climatalogical wind stress. Currently
                              :: NCEP long term average, gridded to 1/12

./inputs/tauyClim.bin         :: Climatalogical wind stress. Currently
                              :: NCEP long term average, gridded to 1/12

./inputs/topog.bin            :: Bathymetry, rounded to 1m and gridded to
                              :: 1/12.

./run/README                  :: Notes on run directory contents

./run/runit                   :: Commands to run this setup on MITgcm cluster

./filelist                    :: This file