| 1 |
jmc |
1.1 |
#! /usr/bin/env bash |
| 2 |
|
|
|
| 3 |
|
|
# $Header: $ |
| 4 |
|
|
# $Name: $ |
| 5 |
|
|
|
| 6 |
|
|
# Get list of machines |
| 7 |
|
|
#mfile=/tmp/53210.1.darwin/machines |
| 8 |
|
|
mfile=$1 |
| 9 |
|
|
if [ -f $mfile ]; then |
| 10 |
|
|
echo 'Machine file == '$mfile |
| 11 |
|
|
else |
| 12 |
|
|
echo 'No machine file '$mfile |
| 13 |
|
|
exit |
| 14 |
|
|
fi |
| 15 |
|
|
ml=( `cat $mfile` ) |
| 16 |
|
|
|
| 17 |
|
|
# Set root directory for run |
| 18 |
|
|
#exe_root=/scratch/jmc/nesting |
| 19 |
|
|
exe_root=`pwd` |
| 20 |
|
|
|
| 21 |
|
|
# Settings for driver |
| 22 |
|
|
exe1=${exe_root}/run_driv/mitgcmuv |
| 23 |
|
|
wdir1=${exe_root}/run_driv |
| 24 |
|
|
np1=4 |
| 25 |
|
|
|
| 26 |
|
|
# Settings for Med model config |
| 27 |
|
|
exe2=${exe_root}/run_med/mitgcmuv |
| 28 |
|
|
np2=40 |
| 29 |
|
|
wdir2=${exe_root}/run_med |
| 30 |
|
|
|
| 31 |
|
|
|
| 32 |
|
|
# Settings for Gib model config |
| 33 |
|
|
exe3=${exe_root}/run_gib/mitgcmuv |
| 34 |
|
|
np3=20 |
| 35 |
|
|
wdir3=${exe_root}/run_gib |
| 36 |
|
|
|
| 37 |
|
|
echo "== root_dir: $exe_root" |
| 38 |
|
|
echo "= driver on $np1 procs:" |
| 39 |
|
|
ls -l $exe1 |
| 40 |
|
|
echo " in dir: $wdir1" |
| 41 |
|
|
echo "= parent on $np2 procs:" |
| 42 |
|
|
ls -l $exe2 |
| 43 |
|
|
echo " in dir: $wdir2" |
| 44 |
|
|
echo "= child on $np3 procs:" |
| 45 |
|
|
ls -l $exe3 |
| 46 |
|
|
echo " in dir: $wdir3" |
| 47 |
|
|
npTot=`expr $np1 + $np2 + $np3` |
| 48 |
|
|
echo "== total Nb of procs = $npTot" |
| 49 |
|
|
|
| 50 |
|
|
# remove all rank_N links |
| 51 |
|
|
rm -f pgfile; touch pgfile |
| 52 |
|
|
rm -f rank_[0-9] rank_[0-9][0-9] |
| 53 |
|
|
|
| 54 |
|
|
# Make proc group file for run and link directories |
| 55 |
|
|
i=0 |
| 56 |
|
|
|
| 57 |
|
|
#- Driver |
| 58 |
|
|
exe=$exe1 |
| 59 |
|
|
wdir=$wdir1 |
| 60 |
|
|
ihi=$((${i}+${np1})) |
| 61 |
|
|
echo ${ml[${i}]} 0 ${exe} >> pgfile |
| 62 |
|
|
rdir=`echo $i | awk '{printf "rank_%d", $1}'` |
| 63 |
|
|
echo ln -s $wdir $rdir |
| 64 |
|
|
ln -s $wdir $rdir |
| 65 |
|
|
i=$((${i}+1)) |
| 66 |
|
|
while [ $i -lt $ihi ]; do |
| 67 |
|
|
echo ${ml[${i}]} 1 ${exe} >> pgfile |
| 68 |
|
|
rdir=`echo $i | awk '{printf "rank_%d", $1}'` |
| 69 |
|
|
echo ln -s $wdir $rdir |
| 70 |
|
|
ln -s $wdir $rdir |
| 71 |
|
|
i=$((${i}+1)) |
| 72 |
|
|
done |
| 73 |
|
|
|
| 74 |
|
|
#- MED |
| 75 |
|
|
exe=${exe2} |
| 76 |
|
|
wdir=$wdir2 |
| 77 |
|
|
ihi=$((${i}+${np2})) |
| 78 |
|
|
while [ $i -lt $ihi ]; do |
| 79 |
|
|
echo ${ml[${i}]} 1 ${exe} >> pgfile |
| 80 |
|
|
rdir=`echo $i | awk '{printf "rank_%d", $1}'` |
| 81 |
|
|
echo ln -s $wdir $rdir |
| 82 |
|
|
ln -s $wdir $rdir |
| 83 |
|
|
i=$((${i}+1)) |
| 84 |
|
|
done |
| 85 |
|
|
|
| 86 |
|
|
#- GIB |
| 87 |
|
|
exe=${exe3} |
| 88 |
|
|
wdir=$wdir3 |
| 89 |
|
|
ihi=$((${i}+${np3})) |
| 90 |
|
|
while [ $i -lt $ihi ]; do |
| 91 |
|
|
echo ${ml[${i}]} 1 ${exe} >> pgfile |
| 92 |
|
|
rdir=`echo $i | awk '{printf "rank_%d", $1}'` |
| 93 |
|
|
echo ln -s $wdir $rdir |
| 94 |
|
|
ln -s $wdir $rdir |
| 95 |
|
|
i=$((${i}+1)) |
| 96 |
|
|
done |
| 97 |
|
|
npgfile=${i} |
| 98 |
|
|
|
| 99 |
|
|
source /etc/profile.d/modules.sh |
| 100 |
|
|
module load mitgcm |
| 101 |
|
|
echo '== command line to run:' |
| 102 |
|
|
#echo ' mpirun.ch_mx -pg pgfile -np' $npgfile -wd ${wdir1} ${exe1} |
| 103 |
|
|
echo ' mpirun -pg pgfile -np' $npgfile ${exe1} '>& std_outp' |
| 104 |
|
|
|
| 105 |
|
|
|
Parent Directory
| 
Revision Log
| 
Revision Graph