/[MITgcm]/MITgcm_contrib/quarter_degree_global/README.txt
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Contents of /MITgcm_contrib/quarter_degree_global/README.txt

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Revision 1.29 - (show annotations) (download)
Sun Dec 19 17:42:02 2004 UTC (20 years, 7 months ago) by dimitri
Branch: MAIN
Changes since 1.28: +8 -1 lines
File MIME type: text/plain
quarter_degree_global/*

1 Instructions for setting up a quarter degree integration
2 forced 1. by NCEP fields and 2. by SIO fields.
3
4 ##########################################################################
5 # getting the code from anonymous CVS server
6
7 cvs co MITgcm_contrib/quarter_degree_global
8 cvs co MITgcm_code
9 cvs co MITgcm/verification/global_with_exf
10 cvs co MITgcm/verification/testreport
11
12
13 #############################################################################
14 # 1-CPU verification/global_with_exf including pkg/diagnostics
15
16 cd MITgcm/verification/global_with_exf/build
17 \rm *
18 \cp ../code/* .
19 \cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf .
20 \cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h .
21 \cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h .
22 \cp ../../../../MITgcm_contrib/quarter_degree_global/code/DIAGNOSTICS_SIZE.h .
23 \cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test1 .
24 \mv SIZE.h_test1 SIZE.h
25 ../../../tools/genmake2
26 make depend
27 make -j
28 cd ..
29 mkdir run
30 cd run
31 \rm *
32 \cp ../build/mitgcmuv .
33 \ln -sf ../input/* .
34 \rm data
35 \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data
36 \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.pkg .
37 \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.kpp .
38 \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.diagnostics .
39 mitgcmuv >& output.txt
40
41
42 there is comparison output in
43 ../../../../MITgcm_contrib/quarter_degree_global/results/output.txt
44
45
46 #############################################################################
47 # mpi test verification/global_with_exf including pkg/diagnostics on columbia
48
49 cd MITgcm/verification/global_with_exf/build
50 \rm *
51 \cp ../code/* .
52 \cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf .
53 \cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h .
54 \cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h .
55 \cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test .
56 \mv SIZE.h_test SIZE.h
57 ../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
58 make depend
59 make -j
60 cd ..
61 mkdir run
62 cd run
63 \rm *
64 \cp ../build/mitgcmuv .
65 \ln -sf ../input/* .
66 \rm data
67 \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data
68 mpirun -np 2 mitgcmuv
69
70 there is comparison output in
71 ../../../../MITgcm_contrib/quarter_degree_global/results/STDOUT.0000
72
73
74 ##########################################################################
75 # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc
76 # requires input files in subdirectory iter69 to be at same level as MITgcm
77 # and MITgcm_contrib. A copy of iter69 resides on columbia10:/nobackup10
78 # The integration length is 4018 days, 1992-2002.
79 # First three days need to be integrated using deltat=200.
80
81 cd MITgcm
82 mkdir bin exe
83 cd bin
84 \rm *
85 \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
86 ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
87 make depend
88 make -j
89 cd ../exe
90 \rm *
91 \cp ../bin/mitgcmuv .
92 \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
93 \ln -sf ../../iter69/* .
94 qsub job_altix
95
96
97 ##########################################################################
98 # 2880x2176 480-cpu (96x30)x(136x16) 1/4-deg integration on altix with efc
99 # requires input files in sudirectory iter69 to be at same level as MITgcm
100 # and MITgcm_contrib. A copy of iter69 with 1/8-deg files resides on
101 # columbia18:/nobackup18/menemenl/eight.
102 # The integration length is 3 days.
103 # First three days need to be integrated using deltat=100.
104
105 cd MITgcm
106 mkdir bin exe
107 cd bin
108 \rm *
109 \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
110 \cp SIZE.h_8_480 SIZE.h
111 ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix
112 make depend
113 make -j
114 cd ../exe
115 \rm *
116 \cp ../bin/mitgcmuv .
117 \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
118 \ln -sf ../../iter69/* .
119 \cp data.exf_clim_8 data.exf_clim
120 \cp data_SIO_8 data
121 qsub job_altix
122
123
124 ##########################################################################
125 # 2880x2176 960-cpu (96x30)x(68x32) 1/4-deg integration on altix with efc
126 # requires input files in sudirectory iter69 to be at same level as MITgcm
127 # and MITgcm_contrib. A copy of iter69 with 1/8-deg files resides on
128 # columbia18:/nobackup18/menemenl/eight.
129 # The integration length is 3 days.
130 # First three days need to be integrated using deltat=100.
131
132 module purge
133 module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.11-85
134 setenv MPI_DSM_DISTRIBUTE
135 cd MITgcm
136 mkdir bin exe
137 cd bin
138 \rm *
139 \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
140 \cp SIZE.h_8_960 SIZE.h
141 ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
142 make depend
143 make -j
144
145 cd ../exe
146 \cp ../bin/mitgcmuv .
147 \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
148 \ln -sf ../../iter69/* .
149 \cp data.exf_clim_8 data.exf_clim
150 \cp data_SIO_8 data
151 modpickup_8
152
153 /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
154 -d /nobackup/menemenl/eighth/MITgcm/exe \
155 c19 480 runon 11-490 mitgcmuv960 : \
156 c18 480 runon 11-490 mitgcmuv960 \
157 >&! output.run &
158
159 mpirun -v -a a2k c18 480 runon 11-490 mitgcmuv : c20 480 runon 11-490 mitgcmuv
160 mpirun -v -a a2k c18 508 runon 11-490 mitgcmuv : c20 508 runon 11-490 mitgcmuv
161
162 on columbia18:
163 ln -sf /nobackup18/menemenl/eighth /tmp/eighth
164
165 on columbia20:
166 ln -sf /nobackup20/menemenl/eighth /tmp/eighth
167
168 cd ~/exe
169 \cp /tmp/eighth/MITgcm/exe/mitgcmuv960 .
170 \cp /tmp/eighth/MITgcm_contrib/quarter_degree_global/input/* .
171 \ln -sf /tmp/eighth/iter69/* .
172 \cp data.exf_clim_8 data.exf_clim
173 \cp data_SIO_8 data
174 \ln -sf /tmp/eighth/MITgcm/exe/pick* .
175
176 mpirun -v -a a2k -d /tmp/eighth/MITgcm/exe c18 480 runon 11-490 mitgcmuv960 : \
177 c20 480 runon 11-490 mitgcmuv960 >&! output.txt &
178
179 \cp data.test data
180 scp data:columbia17:/nobackup/menemenl/eighth/MITgcm/exe
181 scp data:columbia19:/nobackup/menemenl/eighth/MITgcm/exe
182 scp data:columbia20:/nobackup/menemenl/eighth/MITgcm/exe
183 mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \
184 c18 480 runon 11-490 mitgcmuv1440 : \
185 c19 480 runon 11-490 mitgcmuv1440 : \
186 c20 480 runon 11-490 mitgcmuv1440 \
187 >&! output.test1440
188 mkdir tests
189 mv STDOUT.0000 output.test1440 tests/stdout1440
190 \rm STD*
191 mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \
192 c17 480 runon 11-490 mitgcmuv1920 : \
193 c18 480 runon 11-490 mitgcmuv1920 : \
194 c19 480 runon 11-490 mitgcmuv1920 : \
195 c20 480 runon 11-490 mitgcmuv1920 \
196 >&! output.test1920
197 mv STDOUT.0000 output.test1920 tests/stdout1920
198 \rm STD*
199 \cp data.run data
200 scp data:columbia17:/nobackup/menemenl/eighth/MITgcm/exe
201 scp data:columbia19:/nobackup/menemenl/eighth/MITgcm/exe
202 scp data:columbia20:/nobackup/menemenl/eighth/MITgcm/exe
203 /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
204 -d /nobackup/menemenl/eighth/MITgcm/exe \
205 c17 480 runon 11-490 mitgcmuv1920 : \
206 c18 480 runon 11-490 mitgcmuv1920 : \
207 c19 480 runon 11-490 mitgcmuv1920 : \
208 c20 480 runon 11-490 mitgcmuv1920 \
209 >&! output.run &
210
211
212
213
214 \cp data.test data
215 scp data columbia19:/nobackup/menemenl/eighth/MITgcm/exe
216 scp data columbia20:/nobackup/menemenl/eighth/MITgcm/exe
217 mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \
218 c18 480 runon 9-511 mitgcmuv1440 : \
219 c19 480 runon 9-511 mitgcmuv1440 : \
220 c20 480 runon 9-511 mitgcmuv1440 \
221 >&! output.test1440
222 mkdir tests
223 mv STDOUT.0000 output.test1440 tests/stdout1440
224 \rm STD*
225 \cp data.run data
226 scp data columbia17:/nobackup/menemenl/eighth/MITgcm/exe
227 scp data columbia19:/nobackup/menemenl/eighth/MITgcm/exe
228 mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \
229 c17 480 runon 9-511 mitgcmuv1440 : \
230 c18 480 runon 9-511 mitgcmuv1440 : \
231 c19 480 runon 9-511 mitgcmuv1440 \
232 >&! output.run
233
234
235
236
237 fails for 1/8
238 > viscA4GridMin=3.e-4,
239 > viscA4GridMax=4.e-3,
240 > viscC4Leith=0.05,
241 > deltat=300
242 fails:
243 < viscA4GridMin=6.e-4,
244 < viscA4GridMax=8.e-3,
245 < viscC4Leith=0.1,
246 fails:
247 < viscA4GridMin=6.e-4,
248 < viscA4GridMax=8.e-3,
249 < viscC4Leith=0.2,
250 fails:
251 < viscA4GridMin=1.e-3,
252 < viscA4GridMax=1.e-2,
253 < viscC4Leith=0.2,
254 fails:
255 < viscA4GridMin=1.e-3,
256 < viscA4GridMax=1.e-2,
257 < viscC4Leith=0.3,
258 fails:
259 < viscA4GridMin=1.2e-3,
260 < viscA4GridMax=1.6e-2,
261 < viscC4Leith=0.2,
262 fails:
263 < viscA4GridMin=1.2e-3,
264 < viscA4GridMax=1.6e-2,
265 < viscC4Leith=0.4,
266 fails
267 < viscA4GridMin=1.2e-3,
268 < viscA4GridMax=1.2e-2,
269 < viscC4Leith=1.2,
270 fails:
271 < viscA4GridMin=2e-3,
272 < viscA4GridMax=1e-2,
273 < viscC4Leith=0.1,
274 fails:
275 < viscA4GridMin=2e-3,
276 < viscA4GridMax=1e-2,
277 < viscC4Leith=0.2,
278 fails:
279 < viscA4GridMin=4e-3,
280 < viscA4GridMax=8e-3,
281 < viscC4Leith=0.2,
282 fails:
283 viscA4GridMin=5e-3,
284 viscA4GridMax=1e-2,
285 viscC4Leith=.2,
286 starting with time step 50112, try:
287 (this mean day 174 becomes day 116)
288 viscA4GridMin=6.e-4,
289 viscA4GridMax=8.e-3,
290 viscC4Leith=0.1,
291 deltat=200
292
293
294 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%
295
296 1/8 timing tests:
297
298 columbia20
299 scsl.1.5.0.0
300 c18 intel-comp.8.0.070
301 240-CPU default mpt.1.11-85
302 ------------------------------------------------
303 MAIN LOOP 7115 5066
304 EXF_GETFORCING 372 38
305 DO_OCEANIC_PHYS 1221 1272
306 STATEKPP 509 532
307 KPPMIX 370 374
308 DYNAMICS 1527 1429
309 SOLVE_FOR_PRESSURE 1804 206
310 BLOCKING_EXCHANGES 117 115
311 THERMODYNAMICS 1166 1100
312 DO_THE_MODEL_IO 173 177
313 WRITE_CHECKPOINT 341 333
314
315
316 columbia20
317 scsl.1.5.0.0
318 c18 intel-comp.8.0.070
319 480-CPU default mpt.1.11-85
320 c19 default
321 c17 default, other processes
322 c19 new
323 -------------------------------------------------------------------------
324 MAIN LOOP 4024 2917 5379 8895 3571
325 EXF_GETFORCING 218 33 880 261 227
326 DO_OCEANIC_PHYS 622 619 621 913 620
327 STATEKPP 269 265 268 310 265
328 KPPMIX 190 188 189 291 189
329 DYNAMICS 747 718 745 1456 714
330 SOLVE_FOR_PRESSURE 966 119 1703 2748 900
331 BLOCKING_EXCHANGES 64 70 392 375 70
332 THERMODYNAMICS 553 582 566 1510 584
333 DO_THE_MODEL_IO 178 156 149 184 152
334 WRITE_CHECKPOINT 364 332 864 420 333
335
336
337
338 CPU 240 480 960 1440 1920
339 -------------------------------------------------------------
340 MAIN LOOP 5066 2917 2227 1551 1276
341 EXF_GETFORCING 38 33 126 60 83
342 DO_OCEANIC_PHYS 1272 619 320 390 186
343 STATEKPP 532 265 138 181 77
344 KPPMIX 374 188 98 112 53
345 DYNAMICS 1429 718 313 319 173
346 SOLVE_FOR_PRESSURE 206 119 483 169 310
347 BLOCKING_EXCHANGES 115 70 53 29 28
348 THERMODYNAMICS 1100 582 294 279 172
349 DO_THE_MODEL_IO 177 156 131 202 155
350 WRITE_CHECKPOINT 333 332 302 524 352
351
352
353 4 clusters timeave
354 Dec 16 08:17 Ttave.0000051840.data
355 Dec 16 08:47 Ttave.0000053136.data
356 Dec 16 09:17 Ttave.0000054432.data
357 Dec 16 09:53 Ttave.0000055728.data
358 Dec 17 14:08 Ttave.0000075168.data
359 Dec 17 14:33 Ttave.0000076464.data
360 Dec 17 14:58 Ttave.0000077760.data
361 Dec 17 15:29 Ttave.0000079056.data
362
363 1 cluster timeave
364 Dec 16 22:14 Ttave.0000059616.data
365 Dec 16 23:16 Ttave.0000060912.data
366 Dec 17 00:19 Ttave.0000062208.data
367 Dec 17 01:27 Ttave.0000063504.data
368 Dec 17 02:29 Ttave.0000064800.data
369 Dec 17 03:31 Ttave.0000066096.data
370 Dec 17 04:39 Ttave.0000067392.data
371 Dec 17 05:42 Ttave.0000068688.data
372 Dec 17 06:44 Ttave.0000069984.data
373
374 2 cluster timeave
375 Dec 17 21:19 Ttave.0000086832.data
376 Dec 17 21:55 Ttave.0000088128.data 36
377 Dec 17 22:30 Ttave.0000089424.data 35
378 Dec 17 23:12 Ttave.0000090720.data 42
379 Dec 17 23:47 Ttave.0000092016.data 35
380 Dec 18 00:23 Ttave.0000093312.data 36
381 Dec 18 01:04 Ttave.0000094608.data 41
382 Dec 18 01:39 Ttave.0000095904.data 35
383
384 2 cluster diagnostics
385 Dec 18 02:26 THETA.0000086832.data
386 Dec 18 03:05 THETA.0000088128.data 39
387 Dec 18 03:43 THETA.0000089424.data 38
388 Dec 18 04:27 THETA.0000090720.data 44
389 Dec 18 05:06 THETA.0000092016.data 39
390 Dec 18 05:45 THETA.0000093312.data 39
391 Dec 18 06:29 THETA.0000094608.data 44
392 Dec 18 07:08 THETA.0000095904.data 39
393
394
395 %%%%%%%%%%%%%%%%%
396
397
398
399 e1=readbin('test_oldstyle/ETAtave.0000000018.data',[90 40]);
400 e2=readbin('ETAN.0000000018.data',[90 40]);
401 e16=readbin('test_oldstyle/Eta.0000000016.data',[90 40]);
402 e17=readbin('test_oldstyle/Eta.0000000017.data',[90 40]);
403 e18=readbin('test_oldstyle/Eta.0000000018.data',[90 40]);
404 minmax(e1-e2)
405 minmax(e2-(e16+e17+e18)/3)
406
407 e1=readbin('test_oldstyle/sFluxtave.0000000018.data',[90 40]);
408 e2=readbin('SFLUX.0000000018.data',[90 40]);
409 minmax(e1-e2)
410
411 e1=readbin('test_oldstyle/tFluxtave.0000000018.data',[90 40]);
412 e2=readbin('TFLUX.0000000018.data',[90 40]);
413 minmax(e1-e2)
414
415 e1=readbin('TRELAX.0000000018.data',[90 40]);
416 subplot(211),mypcolor(e1');colorbar
417
418 e1=readbin('SRELAX.0000000018.data',[90 40]);
419 subplot(211),mypcolor(e1');colorbar
420
421 e1=readbin('TICE.0000000018.data',[90 40]);
422 subplot(211),mypcolor(e1');colorbar
423
424
425 e1=readbin('test_oldstyle/wVeltave.0000000018.data',[90 40 15]);
426 e2=readbin('WVEL.0000000018.data',[90 40 15]);
427 e16=readbin('test_oldstyle/W.0000000016.data',[90 40 15]);
428 e17=readbin('test_oldstyle/W.0000000017.data',[90 40 15]);
429 e18=readbin('test_oldstyle/W.0000000018.data',[90 40 15]);
430 minmax(e1-e2)
431 minmax(e2-(e16+e17+e18)/3)

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