--- MITgcm_contrib/quarter_degree_global/README.txt 2004/11/30 01:59:56 1.3 +++ MITgcm_contrib/quarter_degree_global/README.txt 2004/12/20 22:21:07 1.30 @@ -6,22 +6,363 @@ cvs co MITgcm_contrib/quarter_degree_global cvs co MITgcm_code +cvs co MITgcm/verification/global_with_exf +cvs co MITgcm/verification/testreport + + +############################################################################# +# 1-CPU verification/global_with_exf including pkg/diagnostics + +cd MITgcm/verification/global_with_exf/build +\rm * +\cp ../code/* . +\cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf . +\cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h . +\cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h . +\cp ../../../../MITgcm_contrib/quarter_degree_global/code/DIAGNOSTICS_SIZE.h . +\cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test1 . +\mv SIZE.h_test1 SIZE.h +../../../tools/genmake2 +make depend +make -j +cd .. +mkdir run +cd run +\rm * +\cp ../build/mitgcmuv . +\ln -sf ../input/* . +\rm data +\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data +\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.pkg . +\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.kpp . +\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.diagnostics . +mitgcmuv >& output.txt + + +there is comparison output in +../../../../MITgcm_contrib/quarter_degree_global/results/output.txt + + +############################################################################# +# mpi test verification/global_with_exf including pkg/diagnostics on columbia + +cd MITgcm/verification/global_with_exf/build +\rm * +\cp ../code/* . +\cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf . +\cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h . +\cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h . +\cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test . +\mv SIZE.h_test SIZE.h +../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas +make depend +make -j +cd .. +mkdir run +cd run +\rm * +\cp ../build/mitgcmuv . +\ln -sf ../input/* . +\rm data +\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data +mpirun -np 2 mitgcmuv + +there is comparison output in +../../../../MITgcm_contrib/quarter_degree_global/results/STDOUT.0000 + ########################################################################## # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc -# requires input files in sudirectory iter69 to be at same level as MITgcm +# requires input files in subdirectory iter69 to be at same level as MITgcm # and MITgcm_contrib. A copy of iter69 resides on columbia10:/nobackup10 +# The integration length is 4018 days, 1992-2002. +# First three days need to be integrated using deltat=200. + +cd MITgcm +mkdir bin exe +cd bin +\rm * +\cp ../../MITgcm_contrib/quarter_degree_global/code/* . +../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas +make depend +make -j +cd ../exe +\rm * +\cp ../bin/mitgcmuv . +\cp ../../MITgcm_contrib/quarter_degree_global/input/* . +\ln -sf ../../iter69/* . +qsub job_altix + + +########################################################################## +# 2880x2176 480-cpu (96x30)x(136x16) 1/4-deg integration on altix with efc +# requires input files in sudirectory iter69 to be at same level as MITgcm +# and MITgcm_contrib. A copy of iter69 with 1/8-deg files resides on +# columbia18:/nobackup18/menemenl/eight. +# The integration length is 3 days. +# First three days need to be integrated using deltat=100. cd MITgcm mkdir bin exe cd bin \rm * -../tools/genmake2 -mods=../../MITgcm_contrib/quarter_degree_global/code -of ../tools/build_options/linux_ia64_efc+mpi_altix +\cp ../../MITgcm_contrib/quarter_degree_global/code/* . +\cp SIZE.h_8_480 SIZE.h +../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix make depend -make -j 16 +make -j cd ../exe \rm * \cp ../bin/mitgcmuv . \cp ../../MITgcm_contrib/quarter_degree_global/input/* . \ln -sf ../../iter69/* . +\cp data.exf_clim_8 data.exf_clim +\cp data_SIO_8 data qsub job_altix + + +########################################################################## +# 2880x2176 960-cpu (96x30)x(68x32) 1/4-deg integration on altix with efc +# requires input files in sudirectory iter69 to be at same level as MITgcm +# and MITgcm_contrib. A copy of iter69 with 1/8-deg files resides on +# columbia18:/nobackup18/menemenl/eight. +# The integration length is 3 days. +# First three days need to be integrated using deltat=100. + +module purge +module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.11-85 +setenv MPI_DSM_DISTRIBUTE +cd MITgcm +mkdir bin exe +cd bin +\rm * +\cp ../../MITgcm_contrib/quarter_degree_global/code/* . +\cp SIZE.h_8_960 SIZE.h +../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas +make depend +make -j 4 + +cd ../exe +\cp ../bin/mitgcmuv . +\cp ../../MITgcm_contrib/quarter_degree_global/input/* . +\ln -sf ../../iter69/* . +\cp data.exf_clim_8 data.exf_clim +\cp data_SIO_8 data +modpickup_8 + +/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ + -d /nobackup/menemenl/eighth/MITgcm/exe \ + c19 480 runon 11-490 mitgcmuv960 : \ + c18 480 runon 11-490 mitgcmuv960 \ + >&! output.run & + + + +/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ + -d /nobackup/menemenl/eighth/MITgcm/exe \ + c17 480 runon 11-490 mitgcmuv1920 : \ + c18 480 runon 11-490 mitgcmuv1920 : \ + c19 480 runon 11-490 mitgcmuv1920 : \ + c20 480 runon 11-490 mitgcmuv1920 \ + >&! output.run & + + + + + + +fails for 1/8 +> viscA4GridMin=3.e-4, +> viscA4GridMax=4.e-3, +> viscC4Leith=0.05, +> deltat=300 +fails: +< viscA4GridMin=6.e-4, +< viscA4GridMax=8.e-3, +< viscC4Leith=0.1, +fails: +< viscA4GridMin=6.e-4, +< viscA4GridMax=8.e-3, +< viscC4Leith=0.2, +fails: +< viscA4GridMin=1.e-3, +< viscA4GridMax=1.e-2, +< viscC4Leith=0.2, +fails: +< viscA4GridMin=1.e-3, +< viscA4GridMax=1.e-2, +< viscC4Leith=0.3, +fails: +< viscA4GridMin=1.2e-3, +< viscA4GridMax=1.6e-2, +< viscC4Leith=0.2, +fails: +< viscA4GridMin=1.2e-3, +< viscA4GridMax=1.6e-2, +< viscC4Leith=0.4, +fails +< viscA4GridMin=1.2e-3, +< viscA4GridMax=1.2e-2, +< viscC4Leith=1.2, +fails: +< viscA4GridMin=2e-3, +< viscA4GridMax=1e-2, +< viscC4Leith=0.1, +fails: +< viscA4GridMin=2e-3, +< viscA4GridMax=1e-2, +< viscC4Leith=0.2, +fails: +< viscA4GridMin=4e-3, +< viscA4GridMax=8e-3, +< viscC4Leith=0.2, +fails: + viscA4GridMin=5e-3, + viscA4GridMax=1e-2, + viscC4Leith=.2, +starting with time step 50112, try: +(this mean day 174 becomes day 116) + viscA4GridMin=6.e-4, + viscA4GridMax=8.e-3, + viscC4Leith=0.1, + deltat=200 + + +%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +1/8 timing tests: + + columbia20 + scsl.1.5.0.0 + c18 intel-comp.8.0.070 +240-CPU default mpt.1.11-85 +------------------------------------------------ +MAIN LOOP 7115 5066 +EXF_GETFORCING 372 38 +DO_OCEANIC_PHYS 1221 1272 +STATEKPP 509 532 +KPPMIX 370 374 +DYNAMICS 1527 1429 +SOLVE_FOR_PRESSURE 1804 206 +BLOCKING_EXCHANGES 117 115 +THERMODYNAMICS 1166 1100 +DO_THE_MODEL_IO 173 177 +WRITE_CHECKPOINT 341 333 + + + columbia20 + scsl.1.5.0.0 + c18 intel-comp.8.0.070 +480-CPU default mpt.1.11-85 + c19 default + c17 default, other processes + c19 new +------------------------------------------------------------------------- +MAIN LOOP 4024 2917 5379 8895 3571 +EXF_GETFORCING 218 33 880 261 227 +DO_OCEANIC_PHYS 622 619 621 913 620 +STATEKPP 269 265 268 310 265 +KPPMIX 190 188 189 291 189 +DYNAMICS 747 718 745 1456 714 +SOLVE_FOR_PRESSURE 966 119 1703 2748 900 +BLOCKING_EXCHANGES 64 70 392 375 70 +THERMODYNAMICS 553 582 566 1510 584 +DO_THE_MODEL_IO 178 156 149 184 152 +WRITE_CHECKPOINT 364 332 864 420 333 + + + +CPU 240 480 960 1440 1920 +------------------------------------------------------------- +MAIN LOOP 5066 2917 2227 1551 1276 +EXF_GETFORCING 38 33 126 60 83 +DO_OCEANIC_PHYS 1272 619 320 390 186 +STATEKPP 532 265 138 181 77 +KPPMIX 374 188 98 112 53 +DYNAMICS 1429 718 313 319 173 +SOLVE_FOR_PRESSURE 206 119 483 169 310 +BLOCKING_EXCHANGES 115 70 53 29 28 +THERMODYNAMICS 1100 582 294 279 172 +DO_THE_MODEL_IO 177 156 131 202 155 +WRITE_CHECKPOINT 333 332 302 524 352 + + +4 clusters timeave +Dec 16 08:17 Ttave.0000051840.data +Dec 16 08:47 Ttave.0000053136.data +Dec 16 09:17 Ttave.0000054432.data +Dec 16 09:53 Ttave.0000055728.data +Dec 17 14:08 Ttave.0000075168.data +Dec 17 14:33 Ttave.0000076464.data +Dec 17 14:58 Ttave.0000077760.data +Dec 17 15:29 Ttave.0000079056.data + +1 cluster timeave +Dec 16 22:14 Ttave.0000059616.data +Dec 16 23:16 Ttave.0000060912.data +Dec 17 00:19 Ttave.0000062208.data +Dec 17 01:27 Ttave.0000063504.data +Dec 17 02:29 Ttave.0000064800.data +Dec 17 03:31 Ttave.0000066096.data +Dec 17 04:39 Ttave.0000067392.data +Dec 17 05:42 Ttave.0000068688.data +Dec 17 06:44 Ttave.0000069984.data + +2 cluster timeave +Dec 17 21:19 Ttave.0000086832.data +Dec 17 21:55 Ttave.0000088128.data 36 +Dec 17 22:30 Ttave.0000089424.data 35 +Dec 17 23:12 Ttave.0000090720.data 42 +Dec 17 23:47 Ttave.0000092016.data 35 +Dec 18 00:23 Ttave.0000093312.data 36 +Dec 18 01:04 Ttave.0000094608.data 41 +Dec 18 01:39 Ttave.0000095904.data 35 + +2 cluster diagnostics +Dec 18 02:26 THETA.0000086832.data +Dec 18 03:05 THETA.0000088128.data 39 +Dec 18 03:43 THETA.0000089424.data 38 +Dec 18 04:27 THETA.0000090720.data 44 +Dec 18 05:06 THETA.0000092016.data 39 +Dec 18 05:45 THETA.0000093312.data 39 +Dec 18 06:29 THETA.0000094608.data 44 +Dec 18 07:08 THETA.0000095904.data 39 + + +%%%%%%%%%%%%%%%%% + + + +e1=readbin('test_oldstyle/ETAtave.0000000018.data',[90 40]); +e2=readbin('ETAN.0000000018.data',[90 40]); +e16=readbin('test_oldstyle/Eta.0000000016.data',[90 40]); +e17=readbin('test_oldstyle/Eta.0000000017.data',[90 40]); +e18=readbin('test_oldstyle/Eta.0000000018.data',[90 40]); +minmax(e1-e2) +minmax(e2-(e16+e17+e18)/3) + +e1=readbin('test_oldstyle/sFluxtave.0000000018.data',[90 40]); +e2=readbin('SFLUX.0000000018.data',[90 40]); +minmax(e1-e2) + +e1=readbin('test_oldstyle/tFluxtave.0000000018.data',[90 40]); +e2=readbin('TFLUX.0000000018.data',[90 40]); +minmax(e1-e2) + +e1=readbin('TRELAX.0000000018.data',[90 40]); +subplot(211),mypcolor(e1');colorbar + +e1=readbin('SRELAX.0000000018.data',[90 40]); +subplot(211),mypcolor(e1');colorbar + +e1=readbin('TICE.0000000018.data',[90 40]); +subplot(211),mypcolor(e1');colorbar + + +e1=readbin('test_oldstyle/wVeltave.0000000018.data',[90 40 15]); +e2=readbin('WVEL.0000000018.data',[90 40 15]); +e16=readbin('test_oldstyle/W.0000000016.data',[90 40 15]); +e17=readbin('test_oldstyle/W.0000000017.data',[90 40 15]); +e18=readbin('test_oldstyle/W.0000000018.data',[90 40 15]); +minmax(e1-e2) +minmax(e2-(e16+e17+e18)/3)