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mlosch |
1.1 |
#!/bin/csh -x |
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#$Header: $ |
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#$Name: $ |
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#source /opt/gridengine/default/common/settings.csh |
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# |
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# fortran compiler |
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# |
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setenv PGI /opt/pgi |
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setenv PATH ${PGI}/linux86-64/5.2/bin:$PATH |
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setenv MANPATH $MANPATH":"/opt/pce/man:${PGI}/linux86-64/5.2/man |
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# this does not seem to be necessary |
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#setenv LM_LICENSE_FILE $PGI/license.dat |
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# |
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# mpi environment: |
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# |
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# mpich for pgi compiler verions 5.2 |
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setenv MPICH /usr/mpich/mpich-1.2.6-pgi524 |
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# mpich for g77: setenv MPICH /usr/mpich/mpich-1.2.6 |
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setenv PATH ${MPICH}/bin:${PATH} |
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setenv MANPATH $MANPATH":"${MPICH}/man |
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set VENDOR=pgf77 |
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set RUNIT="runit_"$VENDOR |
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set HERE=$cwd |
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set EXE='mpiexec ./mitgcmuv' |
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set OUTFILE=/home/xd1/mlosch/out_pgf77 |
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# |
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# create batch script |
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# |
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cat << EOF >! $HERE/$RUNIT |
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#!/bin/csh -x |
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# select the queue you want to run on |
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#PBS -S /bin/csh |
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#PBS -j oe |
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# give the job a name |
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#PBS -N mitgcm_pgf77 |
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# specify cluster runtime environment and request 2 CPUs |
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#PBS -q big |
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#PBS -l nodes=1:ppn=2 |
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# |
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# o Where to write output |
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#PBS -o $OUTFILE |
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# |
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# o Export all my environment variables to the job |
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#PBS -V |
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# |
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cd \${PBS_O_WORKDIR} |
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$EXE |
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echo "NORMAL END" >> \${PBS_O_WORKDIR}/run.log |
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cp STDOUT.0000 output.txt |
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EOF |
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chmod a+x $RUNIT |
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set COMMAND="qsub -W block=true $HERE/$RUNIT" |
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set COMMAND="/usr/pbs/bin/qsub -W block=true $HERE/$RUNIT" |
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if ( -e $OUTFILE) then |
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rm -r $OUTFILE |
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endif |
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set TDIR=/home/xd1/mlosch/tmp_$VENDOR |
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if ( -e $TDIR ) then |
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rm -rf $TDIR |
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endif |
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mkdir $TDIR |
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cd $TDIR |
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cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_verif_basic >& cvs_co.log |
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if ( $status > 0 ) then |
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cat cvs_co.log |
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endif |
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cd MITgcm/verification |
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set CMD=$cwd/command.qsub |
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cat >! $CMD <<EOF |
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$COMMAND |
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EOF |
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chmod 744 $CMD |
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set OPTFILE=../tools/build_options/linux_amd64_pgf77+mpi_xd1 |
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./testreport -mpi -a "mlosch@awi-bremerhaven.de" -of $OPTFILE -command $CMD >& /dev/null |
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# workaround for mailing the stuff |
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# set name of remote host where to do the mpack command |
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#set rmhost=belle.csail.mit.edu |
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set rmhost=rays1.awi-bremerhaven.de |
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# pack directory into an archive an compress it |
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set fname = `ls -dtr tr_xd1*` |
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tar czf ${fname}'.tar.gz' ${fname} |
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# copy gzipped archive to remote host |
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scp ${fname}'.tar.gz' $rmhost':' |
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# on the remote host execute the mpack command, that send the email |
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#ssh $rmhost '/u/u0/mlosch/bin/mpack -s MITgcm-test '$fname'.tar.gz edhill@mitgcm.org' |
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ssh $rmhost '/home/tphs1/mlosch/bin_sol/mpack -s MITgcm-test '$fname'.tar.gz edhill@mitgcm.org' |
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# wait a little, just to be sure everything is done |
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sleep 2 |
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# remove archives |
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ssh $rmhost 'rm '$fname'.tar.gz' |
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rm $fname'.tar.gz' |
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exit |
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# do it again for copy and pasting |
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set rmhost=belle.csail.mit.edu |
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set fname = `ls -dtr tr_xd1*` |
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tar czf ${fname}'.tar.gz' ${fname} |
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scp ${fname}'.tar.gz' $rmhost':' |
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ssh $rmhost '/u/u0/mlosch/bin/mpack -s MITgcm-test '$fname'.tar.gz edhill@mitgcm.org' |
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sleep 2 |
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ssh $rmhost 'rm '$fname'.tar.gz' |
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rm $fname'.tar.gz' |
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