--- manual/manual.tex	2001/11/13 15:00:00	1.10
+++ manual/manual.tex	2003/08/07 18:27:51	1.16
@@ -1,4 +1,4 @@
-% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.10 2001/11/13 15:00:00 adcroft Exp $
+% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.16 2003/08/07 18:27:51 edhill Exp $
 % $Name:  $
 
 \documentclass[12pt]{book}
@@ -14,6 +14,18 @@
 %cnh%\usepackage{array}
 %cnh%\usepackage{multirow}
 
+%eh3  Commands to reference either files or symbols within the "HTML-ized"
+%eh3  ("vdb") code.
+%eh3  
+\newcommand{\filelink}[2]{
+\htmladdnormallink{\em #1()}{../code_reference/vdb/byname/#2.html}
+}
+\newcommand{\varlink}[2]{
+\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}
+}
+
+
+
 %ph%\usepackage{epsfig}
 %ph%\usepackage{psfrag}
 %ph%\usepackage{oldgerm}
@@ -60,6 +72,24 @@
 %\renewcommand{\chaptername}{Section}
 
 
+% This allows hyperlinks in PDF
+% hyperref package and colors for hyperref package 
+\usepackage{color} 
+\usepackage[dvips]{hyperref} 
+\definecolor{darkgreen}{rgb}{0,0.4,0} 
+\definecolor{darkblue}{rgb}{0,0,0.4} 
+\definecolor{darkred}{rgb}{0.5,0,0} 
+\hypersetup{breaklinks=true, 
+  colorlinks=true, 
+  linkcolor=darkgreen,
+  citecolor=darkblue,
+  pagecolor=darkred,
+  pdftitle={MITgcm Release 1 Documentation}, 
+  pdfauthor={MITgcm-support@mitgcm.org}, 
+  pdfkeywords={oceanography, ocean model, general circulation model,
+    non-hydrostatic, finite volume, inverse methods, adjoint method} 
+  } 
+
 \begin{document}
 
 \bodytext{bgcolor="#FFFFFFFF"} 
@@ -103,7 +133,7 @@
 \input{part7/part7}
 %\pagebreak
 
-% Section: ECCO Interface
+% Section: ECCO
 \input{part8/part8}
 %\pagebreak