--- manual/manual.tex	2002/03/01 20:03:35	1.12
+++ manual/manual.tex	2004/01/28 18:19:36	1.17
@@ -1,4 +1,4 @@
-% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.12 2002/03/01 20:03:35 cnh Exp $
+% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.17 2004/01/28 18:19:36 molod Exp $
 % $Name:  $
 
 \documentclass[12pt]{book}
@@ -14,13 +14,14 @@
 %cnh%\usepackage{array}
 %cnh%\usepackage{multirow}
 
-% Command to reference entries in either "code" or "names"
-% directories of browseable code tree.
-\newcommand{\proclink}[2]{
-\htmladdnormallink{\em #1()}{../../code_reference/vdb/names/#2_docref.html}
+%eh3  Commands to reference either files or symbols within the "HTML-ized"
+%eh3  ("vdb") code.
+%eh3  
+\newcommand{\filelink}[2]{
+\htmladdnormallink{\em #1()}{../code_reference/vdb/byname/#2.html}
 }
 \newcommand{\varlink}[2]{
-\htmladdnormallink{\bf \tt #1}{../../code_reference/vdb/names/#2_docref.html}
+\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}
 }
 
 
@@ -84,11 +85,27 @@
   citecolor=darkblue,
   pagecolor=darkred,
   pdftitle={MITgcm Release 1 Documentation}, 
-  pdfauthor={support@mitgcm.org}, 
+  pdfauthor={MITgcm-support@mitgcm.org}, 
   pdfkeywords={oceanography, ocean model, general circulation model,
     non-hydrostatic, finite volume, inverse methods, adjoint method} 
   } 
 
+% Some definitions (AMM)
+\def\p#1{{\partial \over {\partial #1}}}
+\def\pp#1#2{{\partial #1 \over {\partial #2}}}
+\def\dd#1#2{{d #1 \over {d #2}}}
+\def\bq{\begin{equation}}
+\def\bqa{\begin{eqnarray}}
+\def\eq{\end{equation}}
+\def\eqa{\end{eqnarray}}
+
+\def\h{ {1\over2} }
+\def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}}
+\def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}}
+
+\def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
+
+
 \begin{document}
 
 \bodytext{bgcolor="#FFFFFFFF"} 
@@ -132,7 +149,7 @@
 \input{part7/part7}
 %\pagebreak
 
-% Section: ECCO Interface
+% Section: ECCO
 \input{part8/part8}
 %\pagebreak