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-revision 1.1 by heimbach,
Thu Oct  4 19:27:24 2001 UTC
+revision 1.13 by edhill,
Wed Jan 28 17:44:34 2004 UTC
 Line 250
   pages          = {401 pp.},
                    }
+ @incollection{gri:89,
+  author         = {A. Griewank},
+  year           = 1989,
+  title          = {On automatic differentiation},
+  booktitle      = {Mathematical Programming: Recent Developments and
+                   Applications},
+  pages          = {83--108},
+  editor         = {M. Iri and K. Tanabe},
+  publisher      = {Kluwer},
+  address        = {Dordrecht, NL},
+                   }
+ @Article{gri:92,
+   author =       {A.~Griewank},
+   title =        {Achieving logarithmic growth of temporal and spatial
+   complexity in reverse {A}utomatic {D}ifferentiation},
+   journal       = {Optimization Methods and Software},
+   year          = {1992},
+   volume        = {1},
+   pages         = {35--54}
+ }
  @book{gri:00,
   author         = {A. Griewank},
   title          = {Evaluating Derivatives. Principles and Techniques
-Line 271
+Line 293
   volume         = {39},
   pages          = {2038--3050},
                    }
+ @Article{Haney,
+   author =       {R.L. Haney},
+   title =        {Surface thermal boundary conditions for ocean
+                   circulation models},
+   journal =      jpo,
+   year =         1971,
+   volume =       1,
+   pages =        {241--248}
+ }
  @Article{hil-eta:01,
   author         = {C. Hill and M. Follows and V. Bugnion and
                    J. Marshall},
-  year           = {2001},
+  year           = {2002},
   title          = {Spatial and Temporal Impacts of ocean general
                    circulation on carbon sequestration},
-  journal        = {journal ???},
+  journal        = {Global Biogeochemical Cycles},
   note           = {submitted},
                    }
+ @Article{Holland75,
+  author         = {W.R. Holland and L. B. Lin},
+  year           = {1975a},
+  title          = {On the origin of mesoscale eddies and their contribution
+                    to the general circulation of the ocean. I. A preliminary
+                    numerical experiment},
+  journal        = jpo,
+  volume         = {5},
+  pages          = {642-657}
+                   }
+ @Article{hol-lin:75b,
+  author         = {W.R. Holland and L. B. Lin},
+  year           = {1975b},
+  title          = {On the origin of mesoscale eddies and their contribution
+                    to the general circulation of the ocean. II. A parameter
+                    study},
+  journal        = jpo,
+  volume         = {5},
+  pages          = {658-669}
+                   }
  @book{kas-eta:00,
   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
                    N. Mahowald and R.G. Prinn and D.E. Hartley},
-Line 326
+Line 380
   volume         = {38A},
   pages          = {97--110},
                    }
+ @TechReport{lev:94a,
+   author =       {S. Levitus and T.P.Boyer},
+   title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
+   institution =  {NOAA Atlas NESDIS 3},
+   year =         1994,
+   OPTkey =       {},
+   OPTtype =      {},
+   OPTnumber =    {},
+   OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
+   OPTmonth =     {},
+   OPTnote =      {},
+   OPTannote =    {}
+ }
+ @TechReport{Levitus94,
+   author =       {S. Levitus and T.P.Boyer},
+   title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
+   institution =  {NOAA Atlas NESDIS 4},
+   year =         1994,
+   OPTkey =       {},
+   OPTtype =      {},
+   OPTnumber =    {},
+   OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
+   OPTmonth =     {},
+   OPTnote =      {},
+   OPTannote =    {}
+ }
  @Article{lew-der:85,
   author         = {J. Lewis and J. Derber},
-Line 412
+Line 496
   volume         = {28},
   pages          = {215--248},
                    }
+ %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
+ %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
+ %% (Available from Unidata or in PostScript form by anonymous FTP from
+ %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
+ %%   a hypertext version of the User's Guide available at
+ %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
+ %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
+ %%   also available.
+ @TechReport{rew:97,
+   author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
+   title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
+                   An Interface for Data Access, Version 3},
+   institution =  {Unidata Program Center},
+   type =         {Report},
+   address =      {Boulder, Colorado},
+   year =         1997,
+   note =         {http://www.unidata.ucar.edu/packages/netcdf/},
+ }
  @Article{res-eta:98,
   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
   year           = 1998,
-  title          = {Circumvening storage limitations in variational
+  title          = {Circumventing storage limitations in variational
                    data assimilation studies},
   journal        = {SIAM J. Sci. Comput.},
   volume         = {19},
-Line 446
+Line 551
   publisher      = {Springer-Verlag},
   address        = {Berlin (Germany)},
                    }
+ @Article{DaSilva94,
+  author         = {A. da Silva and A. C. Young and S. Levitus},
+  year           = 1994,
+  title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
+  journal        = {NOAA Atlas NESDIS},
+  volume         = {6},
+  publisher      = {U.S. Department of Commerce},
+  address        = {Washington, D.C. (USA)},
+  note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
+                   }
  @techreport{sta-eta:97,
   author         = {D. Stammer and C. Wunsch and R. Giering and
-                   Q. Zhang and J. Marotzke an J. Marshall and
+                   Q. Zhang and J. Marotzke and J. Marshall and
                    C. Hill},
   year           = 1997,
   title          = {The global ocean circulation estimated from
-Line 472
+Line 588
                    estimated from ocean observations and a general
                    circulation model},
   journal        = jgr,
-  note           = {submitted},
+  note           = {in press},
+                   }
+ @Article{Stommel66,
+  author         = {H. Stommel},
+  year           = 1948,
+  title          = {The western intensification of wind-driven ocean currents},
+  journal        = {Trans. Am. Geophys. Union},
+  volume         = {29},
+  pages          = {206},
                    }
  @Article{tal-cou:87,
-Line 606
+Line 731
   volume         = {57},
   pages          = {305--334},
                    }
+ @InCollection{hill:95,
+   author =       {Hill, C. and J. Marshall},
+   title =        {Application of a Parallel Navier-Stokes Model to
+                   Ocean Circulation in Parallel Computational Fluid
+                   Dynamics},
+   booktitle =    {Implementations and Results Using Parallel
+                   Computers},
+   pages =        {545-552},
+   publisher =    {Elsevier Science B.V.: New York},
+   year =         1995,
+   editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
+ }
+ @Article{marshall:97a,
+   author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
+   title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
+                  modeling},
+   journal =      {JGR},
+   year =         1997,
+   volume =       102,
+   number =       {C3},
+   pages =        {5733-5752}
+ }
+ @Article{marshall:97b,
+   author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
+   title =        {A finite-volume, incompressible Navier Stokes model for
+                   studies of the ocean on parallel computers},
+   journal =      {JGR},
+   year =         1997,
+   volume =       102,
+   number =       {C3},
+   pages =        {5753-5766}
+ }
+ @Article{adcroft:97,
+   author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
+   title =        {Representation of topography by shaved cells in a height
+                   coordinate ocean model},
+   journal =      {MWR},
+   year =         1997,
+   volume =       125,
+   pages =        {2293-2315}
+ }
+ @Article{visbeck:97,
+   author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
+   title =        {Specification of eddy transfer coefficients in
+                   coarse-resolution ocean circulation models},
+   journal =      {JPO},
+   year =         1997,
+   volume =       27,
+   number =       3,
+   pages =        {381-402}
+ }
+ @Article{shaw:98,
+   author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
+                   and Marshall, J.},
+   title =        {A comparison of implicitly parallel multi-threaded and
+                   data-parallel implementations of an ocean model based
+                   on the Navier-Stokes equations},
+   journal =      {J. of Parallel and Distributed Computing},
+   year =         1998,
+   volume =       48,
+   number =       1,
+   pages =        {1-51}
+ }
+ @Article{marshall:98,
+   author =       {J. Marshall and H. Jones and C. Hill},
+   title =        {Efficient ocean modeling using non-hydrostatic algorithms},
+   journal =      {JMR},
+   year =         1998,
+   volume =       18,
+   pages =        {115-134}
+ }
+ @Article{mjn:99,
+   author =       {Marshall, J., Jamous, D and J. Nilsson},
+   title =        {Reconciling `thermodynamic' and `dynamic' methods of
+                   computation of water-mass transformation rates},
+   journal =      {DSR},
+   year =         1999,
+   volume =       46,
+   pages =        {545-572}
+ }
+ @Article{ms:99,
+   author =       {Marshall, J and F. Schott},
+   title =        {Open ocean deep convection: observations, models and theory},
+   journal =      {Rev. Geophys.},
+   year =         1999,
+   volume =       37,
+   number =       1,
+   pages =        {1-64}
+ }
+ @Article{adcroft:99,
+   author =       {Adcroft, A., Hill C. and J. Marshall},
+   title =        {A new treatment of the Coriolis terms in C-grid models
+                   at both high and low resolutions},
+   journal =      {MWR},
+   year =         1999,
+   volume =       127,
+   pages =        {1928-1936}
+ }
+ @InProceedings{hill:99,
+   author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
+   title =        {A Strategy for Terascale Climate Modeling},
+   booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
+   year =         1999,
+   pages = {406-425},
+   publisher =    {World Scientific},
+ }
+ @Article{wardle:00,
+   author =       {Wardle R. and Marshall J.},
+   title =        {Representation of eddies in primitive equation models by a PV flux},
+   journal =      {JPO},
+   year =         2000,
+   volume =       30,
+   number =       10,
+   pages =        {2481-2503}
+ }
+ @Article{ac:02,
+   author =       {Adcroft, A. and J.-M. Campin},
+   title =        {Comparison of finite volume schemes and direct-space-time
+                   methods for ocean circulation models},
+   journal =      {OM},
+   year =         2002,
+   note =         {in preparation}
+ }
+ @Article{adcroft:02,
+   author =       {Adcroft et al.},
+   title =        {Energy conversion in discrete numerical models},
+   journal =      {OM},
+   year =         2002,
+   note =         {in preparation}
+ }
+ @InCollection{arakawa:77,
+   author =       {Arakawa, A. and Lamb, V.},
+   title =        {Computational Design of the Basic Dynamical Processes of
+                   the UCLA General Circulation Model},
+   booktitle =    {Methods in Computational Physics},
+   pages =        {174-267},
+   publisher =    {Academic Press},
+   year =         1977,
+   volume =       17
+ }
+ @Article{adcroft:98,
+   author =       {Adcroft, A. and Marshall, D.},
+   title =        {How slippery are piecewise-constant coastlines in numerical
+                   ocean models?},
+   journal =      {Tellus},
+   year =         1998,
+   volume =       50,
+   number =       1,
+   pages =        {95-108}
+ }
+ @PhdThesis{adcroft:95,
+   author =       {Adcroft, A.},
+   title =        {Numerical Algorithms for use in a Dynamical Model of the
+                   Ocean},
+   school =       {Imperial College, London},
+   year =         1995
+ }
+ @Article{griffies:00,
+   author =       {Griffies, S.,M. and Hallberg, R.,W.},
+   title =        {Biharmonic friction with a Smagorinsky-like viscosity for
+                   use in large-scale eddy-permitting ocean models},
+   journal =      {MWR},
+   year =         2000,
+   volume =       128,
+   number =       8,
+   pages =        {2935-2946}
+ }
+ @Article{wajsowicz:93,
+   author =       {Wajsowicz, R.},
+   title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
+                   FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
+   journal =      {JCP},
+   year =         1993,
+   volume =       105,
+   number =       2,
+   pages =        {333-338}
+ }
+ @Article{campin:02,
+   author =       {Campin et al.},
+   title =        {Conservation of properties in a free-surface model},
+   journal =      {OM},
+   year =         2002,
+   note =         {in preparation}
+ }
+ @Article{dm:95,
+   author =       {Danabasoglu, G. and McWilliams J.C.},
+   title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
+   journal =      {JC},
+   year =         1995,
+   volume =       8,
+   number =       12,
+   pages =        {2967-2987}
+ }
+ @Article{ldd:97,
+   author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
+   title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
+   journal =      {JPO},
+   year =         1997,
+   volume =       27,
+   number =       11,
+   pages =        {2418-2447}
+ }
+ @Article{gkw:99,
+   author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
+   title =        {Mechanisms for spreading of Mediterranean water in
+                   coarse-resolution numerical models},
+   journal =      {JPO},
+   year =         1999,
+   volume =       29,
+   number =       8,
+   pages =        {1682-1700}
+ }
+ @Article{roe:85,
+   author =       {Roe, P.L.},
+   title =        {Some contributions to the modeling of discontinuous flows},
+   journal =      {Lect. Notes Appl. Math.},
+   year =         1985,
+   volume =       22,
+   pages =        {163-193}
+ }
+ @Article{trenberth90,
+   author =       {K. M. Trenberth and J. Olson and W. G. Large},
+   title =        {The Mean Annual Cycle in {G}lobal {O}cean Wind
+                   Stress},
+   journal =      jpo,
+   year =         1990,
+   volume =       20,
+   pages =        {1742--1760}
+ }
+ @Article{jiang99,
+   author =       {Shi Jiang and Peter H. Stone and Paola
+                   Malanotte-Rizzoli},
+   title =        {An Assessment of the {G}eophysical {F}luid
+                   {D}ynamics {L}aboratory Ocean Model with Coarse
+                   Resolution: Annual-Mean Climatology},
+   journal =      jgr,
+   year =         1999,
+   volume =       104,
+   number =       {C11},
+   pages =        {25,623--25,645}
+ }
+ @Article{szoeke02,
+   author =       {de Szoeke, Roland A. and Roger M. Samelson},
+   title =        {The Duality between the {B}oussinesq and
+                   {N}on-{B}oussinesq Hydrostatic Equations of Motion},
+   journal =      jpo,
+   year =         2002,
+   volume =       32,
+   number =       8,
+   pages =        {2194--2203}
+ }
+ @Article{jackett95,
+   author =       {David R. Jackett and Trevor J. McDougall},
+   title =        {Minimal Adjustment of Hydrographic Profiles to
+                   Achieve Static Stability},
+   journal =      jaot,
+   year =         1995,
+   volume =       12,
+   number =       4,
+   pages =        {381--389}
+ }
+ @Article{mcdougall03,
+   author =       {Trevor J. McDougall and David R. Jackett and Daniel
+                   G. Wright and Rainer Feistel},
+   title =        {Accurate and Computationally Efficient Algorithms
+                   for Potential Temperature and Density of Seawater},
+   journal =      jaot,
+   year =         {2003},
+   OPTkey =       {},
+   OPTvolume =    {},
+   OPTnumber =    {},
+   OPTpages =     {},
+   OPTmonth =     {},
+   OPTnote =      {{\textup{In press}}},
+   OPTannote =    {}
+ }
+ @TechReport{fofonoff83,
+   author =       "Fofonoff, P. and Millard, Jr., R.C.",
+   title =        "Algorithms for Computation of Fundamental Properties
+                   of Seawater",
+   institution =  "Unesco",
+   year =         1983,
+   type =         "Unesco Technical Papers in Marine Science",
+   number =       44,
+   pages =        {53 pp.}
+ }

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