/[MITgcm]/MITgcm_contrib/llc_hires/llc_4320/readme.txt
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revision 1.6 by dimitri, Mon Nov 4 11:10:26 2013 UTC revision 1.10 by dimitri, Sun Jan 12 01:17:21 2014 UTC
# Line 6  qsub -I -q long -l select=300:ncpus=20:m Line 6  qsub -I -q long -l select=300:ncpus=20:m
6    
7  ==============  ==============
8    
9    qsub -I -q R3089666 -l select=1750:model=ivy:aoe=sles11,walltime=04:00:00
10    tcsh
11    cd ~/llc_4320/MITgcm
12    mkdir run
13    lfs setstripe -c -1 run
14    cd run
15    cat $PBS_NODEFILE | awk '{for (i=0;i<20;++i) print $0}' > mynodes
16    setenv PBS_NODEFILE mynodes
17    cp /nobackupp8/chenze/run/mitgcmuv_72x72x29297 .
18    ln -sf /nobackupp8/chenze/run/pickup_seaice_0000000360.meta pickup_seaice.0000000180.meta
19    ln -sf /nobackupp8/chenze/run/pickup_seaice_0000000360.data pickup_seaice.0000000180.data
20    ln -sf /nobackupp8/chenze/run/pickup_0000000360.meta pickup.0000000180.meta
21    ln -sf /nobackupp8/chenze/run/pickup_0000000360.data pickup.0000000180.data
22    ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .
23    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
24    cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .
25    mv data.exch2_72x72x29297 data.exch2
26    module purge
27    module load  comp-intel/2012.0.032 netcdf/4.0
28    module use -a ~kjtaylor/modulefiles
29    module load sles11sp3/mpt-2.10-nasa201311271217
30    setenv MPI_BUFS_PER_PROC 512
31    setenv MPI_REQUEST_MAX 65536
32    setenv MPI_GROUP_MAX 1024
33    setenv MPI_NUM_MEMORY_REGIONS 8
34    setenv MPI_UNBUFFERED_STDIO 1
35    setenv MPI_MEMMAP_OFF 1
36    
37    mpiexec -n 35000 ./mitgcmuv_72x72x29297
38    
39    tail -f STDOUT.00000 | grep advcfl_w
40    
41    ==============
42    
43  cd ~/llc_4320  cd ~/llc_4320
44  cvs co MITgcm_code  cvs co MITgcm_code
45  cvs co MITgcm_contrib/llc_hires/llc_4320  cvs co MITgcm_contrib/llc_hires/llc_4320
46    # set correct tileSizeX and tileSizeY in MITgcm_contrib/llc_hires/llc_4320/cpde-asyn/readtile_mpiio.c
47  cd MITgcm  cd MITgcm
48  module purge  module purge
49  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0  module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0
# Line 20  cp ../../MITgcm_contrib/llc_hires/llc_43 Line 55  cp ../../MITgcm_contrib/llc_hires/llc_43
55   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \   ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
56   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'   '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'
57  make depend  make depend
58  make -j 8  make -j 16
59  cd ../run  cd ../run
60  ln -sf ../build/mitgcmuv .  cp ../build/mitgcmuv mitgcmuv_72x72x29297
61    ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .
62    ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
63    cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .
64    mv data.exch2_72x72x29297 data.exch2
65    export MPI_NUM_MEMORY_REGIONS=256
66    mpiexec -n 35000 ./mitgcmuv_72x72x29297
67    
68    tail -f STDOUT.00000 | grep advcfl_w
69    
70    ==============
71    
72    cd ~/llc_4320
73    cvs co MITgcm_code
74    cvs co MITgcm_contrib/llc_hires/llc_4320
75    # set correct tileSizeX and tileSizeY in MITgcm_contrib/llc_hires/llc_4320/cpde-asyn/readtile_mpiio.c
76    cd MITgcm
77    module purge
78    module load comp-intel/2012.0.032 mpi-sgi/mpt.2.08r7 netcdf/4.0
79    mkdir build run_180x180x5015
80    lfs setstripe -c -1 run_180x180x5015
81    cd build
82    cp ../../MITgcm_contrib/llc_hires/llc_4320/code/SIZE.h_180x180x5015 SIZE.h
83    ../tools/genmake2 -of \
84     ../../MITgcm_contrib/llc_hires/llc_4320/code-async/linux_amd64_ifort+mpi_ice_nas -mpi -mods \
85     '../../MITgcm_contrib/llc_hires/llc_4320/code ../../MITgcm_contrib/llc_hires/llc_4320/code-async'
86    make depend
87    make -j 16
88    cd ../run_180x180x5015
89    cp ../build/mitgcmuv mitgcmuv_180x180x5015
90  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .  ln -sf /nobackup/dmenemen/tarballs/llc_4320/run_template/* .
91  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .  ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
92  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .  cp ../../MITgcm_contrib/llc_hires/llc_4320/input/* .
93  mv data.exch2_72x72x29297 data.exch2  mv data.exch2_72x72x29297 data.exch2
94  mpiexec -n 35000 ./mitgcmuv  export MPI_NUM_MEMORY_REGIONS=256
95    mpiexec -n 6000 ./mitgcmuv_180x180x5015
96    
97  ==============  ==============
98    
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